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BioLiP
>protein
GPISLVLRLRNSKKELNDIRFEFTPGRDTAEGVSQELISAGLVDGRDLVIVAANLQKIVEEPQSNRSVTFKLASGVEGSD
IPDDGKLIGFAQLSIS

The query sequence (length=96) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2v3s:B 96 96 1.0000 1.0000 1.0000 2.64e-64 2v3s:A
2 6fbk:A 83 49 0.1667 0.1928 0.3265 0.34
3 5n2j:B 1381 83 0.2083 0.0145 0.2410 0.72 6fsn:A, 5mu1:A, 5mzo:A, 5n2j:A, 3wzs:A, 7zhb:A, 7zkc:A, 7zle:A, 7zll:A, 7zlu:A, 7zlu:B, 7zlu:C, 7zxw:A
4 6asv:C 311 46 0.1875 0.0579 0.3913 3.8 6asv:A, 6asv:B, 4s2u:A, 7xmu:A, 7xmu:F, 7xmu:C, 7xmu:D, 7xmu:B, 7xmu:E, 7xmv:A, 7xmv:F, 7xmv:C, 7xmv:E, 7xmv:B, 7xmv:D, 7xn3:A, 7xn3:E, 7xn3:C, 7xn3:B, 7xn3:D, 7xn3:F
5 5eb8:A 354 36 0.1354 0.0367 0.3611 6.2 5eb8:B, 5eba:A, 5efd:A, 5efd:B, 5eff:A, 5eff:B, 2f8q:A, 2f8q:B, 2fgl:A, 2fgl:B, 4qce:A, 4qce:B, 4qcf:A, 4qdm:A, 4qdm:B, 5xc0:A, 5xc0:B, 5xc1:A, 5xc1:B
6 7msc:Y 68 22 0.1146 0.1618 0.5000 8.2 7f0d:Y, 7kgb:Y, 7msh:Y, 7msm:Y, 7msz:Y, 7mt2:Y, 7mt3:Y, 7mt7:Y, 7sfr:Y, 5v7q:Y, 5v93:Y

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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