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BioLiP
>protein
GPHMDYDMLTEEQKKKLKEDHTLKILLKNNYVREVFKQFTLSNDKIGYLSHYINDPTIVQVIDHIMKTIDDT

The query sequence (length=72) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7qdw:A 72 72 1.0000 1.0000 1.0000 3.13e-48
2 4xrm:B 64 29 0.1806 0.2031 0.4483 0.057 5bng:B, 5bng:A, 5eg0:A, 5ego:A, 8vts:B, 8vts:D, 8vtt:D, 4xrm:A, 4xrs:A, 4xrs:B
3 8k4l:A 216 25 0.1389 0.0463 0.4000 1.6 8k3d:A, 8k4l:B
4 7arc:I 199 29 0.1528 0.0553 0.3793 1.7 7ard:I
5 4v7e:BK 96 31 0.1806 0.1354 0.4194 1.7 8ip8:da, 8ip9:da, 8ipa:da, 8ipb:da, 8jiw:BK, 8r57:K
6 7k5n:A 237 36 0.1667 0.0506 0.3333 2.0
7 8yb6:I 268 29 0.1806 0.0485 0.4483 4.8 8yha:I
8 8yb6:G 377 29 0.1806 0.0345 0.4483 5.2 8yb6:D, 8yb6:E, 8yb6:F, 8yb6:H, 8yha:E, 8yha:F, 8yha:G, 8yha:H
9 4auc:A 323 29 0.1250 0.0279 0.3103 5.3 1czi:E
10 8yha:D 355 29 0.1806 0.0366 0.4483 5.6
11 5c2y:A 178 18 0.1250 0.0506 0.5000 8.2 5c2y:B
12 8bdc:A 963 39 0.2083 0.0156 0.3846 9.3 8bdc:B, 8bdc:C, 8bdc:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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