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BioLiP
>protein
GPHAKPPYSYISLITMAIQQSPNKMLTLSEIYQWIMDLFPFYRQNQQRWQNSIRHSLSFNDCFLKVPRSPDKPGKGSFWT
LHPDS

The query sequence (length=85) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7yze:A 87 82 0.9647 0.9425 1.0000 1.98e-58 5x07:F, 5x07:C, 5x07:L, 5x07:I, 7yzf:C
2 8vfy:O 102 83 0.9059 0.7549 0.9277 7.45e-56 8vfz:O, 8vfz:P, 8vg1:O, 8vg2:O, 7vox:A, 7vox:C, 7vox:H, 7vox:B, 1vtn:C
3 6ako:C 97 81 0.6941 0.6082 0.7284 1.28e-41 6akp:C, 6lbm:C, 6o3t:A, 6o3t:B
4 7cby:C 100 83 0.6118 0.5200 0.6265 4.02e-35
5 2hdc:A 97 82 0.6235 0.5464 0.6463 4.44e-35
6 7vov:A 93 79 0.5647 0.5161 0.6076 2.16e-33 7vou:C, 7vov:B
7 2c6y:A 98 82 0.5412 0.4694 0.5610 1.43e-28 2c6y:B
8 7yza:A 122 81 0.5294 0.3689 0.5556 5.12e-28 7yz7:A, 7yzc:A, 7yzd:A
9 8bzm:E 95 82 0.5176 0.4632 0.5366 2.31e-27 8bzm:I, 8bzm:A, 8bzm:J
10 7yzb:A 125 80 0.4353 0.2960 0.4625 5.89e-25
11 7yzg:A 121 80 0.4588 0.3223 0.4875 1.52e-23
12 6ncm:A 91 81 0.4353 0.4066 0.4568 1.81e-21 6nce:A, 6ncm:B
13 3g73:B 95 82 0.4353 0.3895 0.4512 7.72e-21 7fj2:A, 7fj2:B, 7fj2:E, 7fj2:F, 3g73:A
14 2a07:J 83 78 0.3647 0.3735 0.3974 3.16e-20 2a07:K, 2a07:F, 2a07:G, 2a07:H, 2a07:I, 2as5:F, 2as5:G
15 3qrf:G 82 77 0.3765 0.3902 0.4156 1.21e-19 3qrf:F, 3qrf:H, 3qrf:I, 4wk8:F, 4wk8:G
16 7tdw:A 90 77 0.3529 0.3333 0.3896 1.60e-18 8sro:A, 8sro:C, 8sro:D, 8sro:B, 8srp:J, 8srp:G, 8srp:E, 8srp:D, 8srp:B, 8srp:A, 8srp:F, 8srp:C, 7tdx:A
17 2uzk:A 97 82 0.4000 0.3505 0.4146 2.18e-17 2uzk:C
18 6el8:A 89 79 0.4000 0.3820 0.4304 2.28e-17 6el8:D
19 3co6:C 91 81 0.3882 0.3626 0.4074 4.14e-16 3co7:C, 3co7:F, 3coa:C, 3coa:F, 5dui:A, 5dui:B, 6lbi:C, 6lbi:D, 6lbi:G, 6lbi:H, 6lbi:K, 6lbi:L, 4lg0:A
20 3l2c:A 85 79 0.3647 0.3647 0.3924 6.62e-15
21 4en2:B 149 53 0.2235 0.1275 0.3585 0.40 6cri:Y, 6cri:Z, 4emz:C, 4emz:B
22 6uri:N 164 75 0.2471 0.1280 0.2800 0.45
23 7z8f:e 4579 46 0.1529 0.0028 0.2826 1.4 5owo:A, 8pr2:f, 8ptk:m, 8ptk:n, 7z8f:f, 7z8f:m, 7z8f:n, 7z8h:A
24 8ptk:f 4502 46 0.1529 0.0029 0.2826 1.4 8ptk:e
25 9baz:A 965 43 0.1647 0.0145 0.3256 2.1 9bap:A
26 7eor:A 745 45 0.1647 0.0188 0.3111 3.4 7eor:C, 7yfi:B
27 7eoq:A 783 45 0.1647 0.0179 0.3111 3.8 7eoq:C, 7eou:A, 7eou:C, 7eu7:B, 7eu7:D, 5tpw:B, 5tq2:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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