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BioLiP
>protein
GPFYLMRELPGSTELTGSTNLITHYNLEQAYNKFCGKKVKEKLSNFLPDLPGMIDLPGSHDNSSLRSLIEKPPILSSSFN
PITGTMLAGFRLH

The query sequence (length=93) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8gxq:s 93 93 1.0000 1.0000 1.0000 7.41e-65
2 6k8d:A 290 82 0.2151 0.0690 0.2439 0.11 6ikz:B, 6k8d:B, 6k8d:C, 6k8d:D, 6knj:A, 6knj:B, 6knl:A, 6knl:B
3 5mcp:F 342 39 0.1613 0.0439 0.3846 0.60
4 6kgy:B 441 76 0.1828 0.0385 0.2237 0.90 6kgy:A, 6kgy:C, 6kgy:D, 6kod:A, 6kod:B, 6kod:C, 6kod:D, 6kyy:A, 6kyy:B, 6kyy:C, 6kyy:D
5 4cv5:A 185 39 0.1290 0.0649 0.3077 9.0
6 6q45:A 476 32 0.1183 0.0231 0.3438 9.4 6q45:B, 6q45:C, 6q45:I, 6q45:J, 6q45:K

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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