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BioLiP
>protein
GPDLQPVTYSEPAFWCSIAYYELNQRVGETFHASQPSLTVDGFTDPSNSERFCLGLLSNVNRNATVEMTRRHIGRGVRLY
YIGGEVFAECLSDSAIFVQSPNCNQRPATVCKIPPGCNLKIFNNQEFAALLAQSVNQGFEAVYQLTRMCTIRMSFVKGWG
AEYRRQTVTSTPCWIELHLNGPLQWLDKVLTQM

The query sequence (length=193) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6m64:A 203 192 0.9741 0.9261 0.9792 3.88e-140 7co1:A, 7co1:C, 7co1:E, 6m64:C, 6m64:E, 5xod:A, 6zvq:A
2 1dd1:B 249 219 0.4767 0.3695 0.4201 1.36e-51 1dd1:A, 1dd1:C
3 4wa0:A 358 52 0.0674 0.0363 0.2500 1.0
4 5xnl:B 503 55 0.0933 0.0358 0.3273 1.0 8c29:B, 8c29:b, 3jcu:B, 3jcu:b, 5mdx:b, 5mdx:B, 7oui:B, 7oui:b, 5xnl:b, 5xnm:B, 5xnm:b, 6yp7:b, 6yp7:B
5 5gom:A 407 57 0.0933 0.0442 0.3158 3.7 5gnr:A, 5gof:A, 5gom:B, 5yew:A, 5yew:B, 5yew:C
6 5goe:A 384 57 0.0933 0.0469 0.3158 4.0 5gns:A, 5gnt:A
7 8wg3:A 548 76 0.1192 0.0420 0.3026 4.3
8 8u8w:A 297 91 0.1192 0.0774 0.2527 4.7
9 2e3x:B 129 16 0.0466 0.0698 0.5625 7.4
10 6dc6:C 996 50 0.0725 0.0141 0.2800 10.0 6dc6:A, 1z7l:A, 1z7l:B, 1z7l:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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