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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GPAFPGMGSEELRLASFYDWPLTAEVPPELLAAAGFFHTDKVRCFFCYGGLQSWKRGDDPWTEHAKWFPGCQFLLRSKGQ
EYINNIHLT

The query sequence (length=89) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2i3h:B 95 92 1.0000 0.9368 0.9674 2.99e-62 3f7h:A, 3f7h:B, 3f7i:A, 3f7i:B, 3gt9:A, 3gt9:B, 3gta:A, 3gta:B, 2i3h:A, 2i3i:A, 2i3i:B, 1tw6:A, 1tw6:B, 3uw5:A, 3uw5:B
2 3f7g:B 101 92 0.8876 0.7822 0.8587 3.79e-56 3f7g:A, 3f7g:C, 3f7g:D, 3f7g:E, 1oxn:E, 1oxn:A, 1oxn:B, 1oxn:C, 1oxn:D, 1oxq:E, 1oxq:A, 1oxq:B, 1oxq:C, 1oxq:D, 1oy7:E, 1oy7:A, 1oy7:B, 1oy7:C, 1oy7:D
3 3t6p:A 330 84 0.4831 0.1303 0.5119 8.68e-30 3d9t:A, 3d9t:B, 3d9u:A, 8dsf:A, 8dsf:B, 8dsf:C, 8dsf:D, 8dso:D, 4eb9:A, 4eb9:B, 4eb9:C, 4eb9:D, 6exw:A, 6exw:C, 6hpr:A, 4hy4:A, 4hy4:B, 4hy5:A, 4hy5:B, 4lge:A, 4lge:B, 4lgu:A, 4lgu:B, 5m6n:A, 5m6n:B, 4mti:A, 4mti:B, 3mup:A, 3mup:B, 3mup:C, 3mup:D, 4mu7:A, 4mu7:B, 3oz1:A, 3oz1:B, 3oz1:C, 3oz1:D, 1qbh:A, 7trm:A, 3uw4:A, 6w74:A, 6w7o:C, 6w7o:D, 6w8i:F, 6w8i:D, 6w8i:E
4 1f9x:A 117 91 0.5506 0.4188 0.5385 9.07e-29 5c0k:A, 5c0l:A, 5c3h:A, 5c3k:A, 5c7a:A, 5c7b:A, 5c7c:A, 5c7d:A, 5c83:A, 5c84:A, 3clx:D, 3clx:A, 3clx:B, 3clx:C, 3cm2:D, 3cm2:H, 3cm2:A, 3cm2:B, 3cm2:C, 3cm2:G, 3cm2:E, 3cm2:F, 3cm2:I, 3cm2:J, 3cm7:C, 3cm7:A, 3cm7:B, 3cm7:D, 4ec4:A, 4ec4:F, 4ec4:B, 4ec4:G, 4ec4:C, 4ec4:D, 4ec4:K, 4ec4:E, 4ec4:L, 4ec4:J, 3eyl:A, 3eyl:B, 6ey2:A, 6ey2:C, 6ey2:B, 6ey2:G, 6ey2:D, 6ey2:E, 6ey2:F, 6ey2:H, 1g3f:A, 1g73:C, 1g73:D, 3g76:A, 3g76:B, 3g76:C, 3g76:D, 3g76:E, 3g76:F, 3g76:G, 3g76:H, 8gh7:A, 8gh7:B, 6h6q:A, 6h6q:B, 6h6r:A, 3hl5:A, 3hl5:B, 4hy0:A, 4hy0:D, 4hy0:B, 4hy0:G, 4hy0:C, 4hy0:E, 4hy0:F, 4hy0:H, 2jk7:A, 4kmp:A, 4kmp:B, 5m6e:A, 5m6f:A, 5m6h:A, 5m6l:A, 5m6m:A, 1nw9:A, 2opy:A, 2opz:A, 2opz:B, 2opz:C, 2opz:D, 5oqw:A, 5oqw:B, 1tfq:A, 1tft:A, 2vsl:A
5 1xb0:F 103 91 0.5506 0.4757 0.5385 1.45e-28 1xb0:A, 1xb0:B, 1xb0:C, 1xb0:D, 1xb0:E, 1xb1:A, 1xb1:B, 1xb1:C, 1xb1:D, 1xb1:E, 1xb1:F
6 4kmn:A 103 85 0.4831 0.4175 0.5059 1.93e-28 7trl:A
7 2uvl:B 95 85 0.4607 0.4316 0.4824 1.96e-28 2uvl:A
8 5yud:A 1238 78 0.4831 0.0347 0.5513 5.80e-24
9 5yud:A 1238 71 0.2921 0.0210 0.3662 4.30e-05
10 8fvu:A 1361 78 0.4607 0.0301 0.5256 1.79e-22 2vm5:A
11 8fvu:A 1361 78 0.4157 0.0272 0.4744 1.05e-17 2vm5:A
12 8fvu:A 1361 73 0.2921 0.0191 0.3562 1.30e-04 2vm5:A
13 1jd5:A 105 88 0.4382 0.3714 0.4432 3.98e-22 1jd4:A, 1jd4:B, 1jd6:A, 1q4q:G, 1q4q:I, 1q4q:F, 1q4q:H, 1q4q:J, 1q4q:A, 1q4q:C, 1q4q:D, 1q4q:B, 1q4q:E
14 7rav:A 773 78 0.4831 0.0556 0.5513 4.30e-21
15 7rav:A 773 70 0.3596 0.0414 0.4571 2.53e-11
16 7rav:A 773 71 0.2921 0.0336 0.3662 7.50e-05
17 1c9q:A 117 77 0.4157 0.3162 0.4805 7.68e-20 8aza:C, 1i3o:E, 1i3o:F, 4j3y:A, 4j3y:C, 4j44:A, 4j44:C, 4j45:A, 4j45:C, 4j46:A, 4j46:C, 4j47:A, 4j47:C, 4j48:A, 4j48:C, 4kju:A, 4kju:C, 4kjv:A, 4kjv:C, 4wvs:A, 4wvt:A, 4wvt:B, 4wvu:A
18 7qgj:A 79 72 0.3596 0.4051 0.4444 3.14e-14 7qgj:B
19 3m0d:D 75 71 0.3146 0.3733 0.3944 1.06e-13 3m0a:D, 7nk0:D, 7nk0:E
20 1m4m:A 112 79 0.3483 0.2768 0.3924 1.75e-13
21 3sip:F 108 73 0.3483 0.2870 0.4247 2.77e-13 1sdz:A, 1se0:A, 3sip:E, 3siq:A, 3siq:B, 3siq:C, 3siq:D, 3siq:E, 3siq:F
22 3m1d:A 78 68 0.2921 0.3333 0.3824 9.73e-12 3m1d:B
23 3ued:C 139 80 0.3371 0.2158 0.3750 2.23e-11 4a0i:A, 4a0i:B, 4a0j:A, 4a0j:B, 4a0n:A, 1e31:A, 1e31:B, 1f3h:A, 1f3h:B, 7lbk:B, 7lbk:A, 7lbo:A, 7lbo:B, 7lbp:A, 7lbp:C, 7lbq:A, 2qfa:A, 2raw:A, 2rax:A, 2rax:E, 2rax:X, 6sho:A, 6sho:B, 3uec:A, 3ued:A, 3uee:A, 3uee:C, 3uef:A, 3uef:C, 3ueg:A, 3ueg:B, 3ueh:A, 3ueh:B, 3uei:A, 3uei:B, 3uig:A, 3uig:B, 3uih:A, 3uih:B, 3uii:A, 3uii:B, 3uij:A, 3uij:B, 3uik:A, 3uik:B, 1xox:A, 1xox:B, 6yie:A, 6yie:D, 6yif:A, 6yih:A
24 8atu:A 2837 91 0.3596 0.0113 0.3516 6.12e-11 8atu:B, 8atx:A, 8atx:B, 8auk:A, 8auk:B, 8auw:B
25 8auw:A 2900 91 0.3596 0.0110 0.3516 6.12e-11
26 2pop:D 80 65 0.2809 0.3125 0.3846 8.41e-11 6gjw:A, 6gjw:B, 6gjw:C, 6gjw:D, 4mtz:A, 4mtz:B, 4mtz:C, 4mtz:D, 4oxc:A, 4oxc:B, 4oxc:C, 4oxc:D, 2poi:A, 2pop:B, 6qci:A, 6qci:B, 6qci:C, 6qci:D, 2qra:D, 2qra:C, 2qra:B, 2qra:A
27 8tcd:D 272 84 0.2584 0.0846 0.2738 0.090 8tcd:B, 8tcd:C, 8tcd:A, 8tcr:C, 8tcr:B, 8tcr:A, 8tcr:D, 8tcs:D, 8tcs:C, 8tcs:A, 8tcs:B
28 5da5:A 91 59 0.1910 0.1868 0.2881 1.1 5da5:J, 5da5:B, 5da5:C, 5da5:D, 5da5:E, 5da5:F, 5da5:H, 5da5:G, 5da5:I, 5da5:K, 5da5:T, 5da5:L, 5da5:M, 5da5:N, 5da5:O, 5da5:P, 5da5:R, 5da5:Q, 5da5:S, 5da5:U, 5da5:d, 5da5:V, 5da5:W, 5da5:X, 5da5:Y, 5da5:Z, 5da5:b, 5da5:a, 5da5:c, 5l89:L, 5l89:M, 5l89:P, 5l89:R, 5l89:U, 5l89:V, 5l8b:A, 5l8b:J, 5l8b:B, 5l8b:C, 5l8b:D, 5l8b:E, 5l8b:H, 5l8b:I, 5l8b:K, 5l8b:T, 5l8b:L, 5l8b:M, 5l8b:O, 5l8b:N, 5l8b:P, 5l8b:R, 5l8b:Q, 5l8b:S, 5l8b:U, 5l8b:d, 5l8b:V, 5l8b:W, 5l8b:X, 5l8b:Y, 5l8b:b, 5l8b:c, 5l8f:B, 5l8f:C, 5l8f:D, 5l8f:F, 5l8f:H, 5l8f:I, 5l8f:G, 5l8g:A, 5l8g:J, 5l8g:B, 5l8g:C, 5l8g:E, 5l8g:D, 5l8g:I, 5l8g:G, 5l8g:F, 5l8g:H, 5l8g:K, 5l8g:L, 5l8g:M, 5l8g:N, 5l8g:O, 5l8g:P, 5l8g:R, 5l8g:S, 5l8g:Q, 5l8g:T, 5l8g:U, 5l8g:d, 5l8g:V, 5l8g:W, 5l8g:X, 5l8g:Y, 5l8g:b, 5l8g:Z, 5l8g:a, 5l8g:c, 6suw:A, 6suw:B, 6suw:C, 6suw:D, 6suw:E, 6suw:F, 6suw:G, 6suw:I, 6suw:H, 6suw:J, 6suw:K, 6suw:L, 6suw:M, 6suw:N, 6suw:O, 6suw:P, 6suw:Q, 6suw:R, 6suw:S, 6suw:T, 6suw:U, 6suw:V, 6suw:W, 6suw:X, 6suw:Y, 6suw:Z, 6suw:a, 6suw:b, 6suw:c, 6suw:d, 6sv1:A, 6sv1:B, 6sv1:C, 6sv1:D, 6sv1:E, 6sv1:F, 6sv1:G, 6sv1:H, 6sv1:I, 6sv1:J, 6sv1:K, 6sv1:L, 6sv1:M, 6sv1:N, 6sv1:O, 6sv1:P, 6sv1:Q, 6sv1:R, 6sv1:S, 6sv1:T, 6sv1:U, 6sv1:V, 6sv1:W, 6sv1:X, 6sv1:Y, 6sv1:Z, 6sv1:a, 6sv1:b, 6sv1:c, 6sv1:d
29 7lsc:A 161 53 0.1685 0.0932 0.2830 1.3 7lsc:B, 7lsc:C, 7lsc:D, 6mgh:A, 6mgh:B, 6mgh:C, 6mgh:D, 6mgh:E, 6mgh:F, 6mgh:G, 6mgh:H
30 6s04:B 497 75 0.2247 0.0402 0.2667 2.8 6s00:A, 6s00:B, 6s04:A, 6s0e:A, 6s0e:B, 6s0f:A, 6s0f:B
31 3dlj:A 471 40 0.1573 0.0297 0.3500 3.9 3dlj:B
32 6xyw:Bc 327 28 0.1124 0.0306 0.3571 4.2
33 6xr5:D 393 55 0.1910 0.0433 0.3091 4.9 6xr5:A, 6xr5:B, 6xr5:E, 6xr5:H
34 7qiw:o 52 26 0.1011 0.1731 0.3462 5.7 8azw:Y, 8b2l:Y3, 8ip8:JB, 8ipa:JB, 8ipb:JB, 8jiv:Cm, 7qiz:o, 4v3p:Lp, 4v7e:Cm
35 5gnw:C 272 13 0.0899 0.0294 0.6154 6.6 5gnw:D, 5gnw:E, 5gnw:F, 5gnw:A, 5gnw:B, 5gnw:G, 5gnw:H, 5grk:A, 5grk:B, 5grk:C, 5grk:D
36 8aaf:Z 52 26 0.1124 0.1923 0.3846 7.7 8agt:Z, 8agu:Z, 8agv:Z, 8agw:Z, 8agx:Z, 8agz:Z, 5apn:m, 5apo:m, 7azy:P, 7b7d:Li, 8bip:Lm, 8bjq:Lm, 8bn3:Q0, 8bqd:AO, 8bqx:AO, 8c3a:AN, 8c3a:CH, 8ccs:Y, 8cdl:Y, 8cdr:Y, 8ceh:Y, 8cf5:Y, 8cg8:Y, 8cgn:Y, 8civ:Y, 8cku:Y, 8cmj:Y, 8cq7:AN, 8cq7:CH, 8cqw:AN, 8cqw:CH, 8cre:AN, 8cre:CH, 5dat:Q0, 5dat:q0, 5dc3:Q0, 5dc3:q0, 5dge:Q0, 5dge:q0, 5dgf:Q0, 5dgf:q0, 5dgv:Q0, 5dgv:q0, 8eub:Am, 8evp:Am, 8evq:Am, 8evr:Am, 8evs:Am, 8evt:Am, 8ewb:Am, 8ewc:Am, 5fci:Q0, 5fci:q0, 5fcj:Q0, 5fcj:q0, 5gak:o, 6gq1:m, 6gqb:m, 6gqv:m, 6hd7:o, 6hhq:AN, 6hhq:DO, 5i4l:Q0, 5i4l:q0, 6i7o:AO, 6i7o:XO, 5it7:mm, 3j6x:80, 3j6y:80, 3j77:90, 3j78:90, 5juo:RA, 5jup:RA, 5jus:RA, 5jut:RA, 5juu:RA, 8k2d:Lm, 8k82:Lm, 5lyb:Q0, 5lyb:q0, 5m1j:m5, 5mc6:AO, 5mei:AN, 5mei:DO, 7mpi:Am, 7mpj:Am, 6n8m:z, 6n8n:z, 6n8o:z, 7n8b:Am, 5ndg:Q0, 5ndg:q0, 5ndv:Q0, 5ndv:q0, 5ndw:Q0, 5ndw:q0, 7nrc:Lo, 7nrd:Lo, 5obm:Q0, 5obm:q0, 8oeq:AN, 8oeq:CH, 6oig:m, 7olc:Lm, 7old:Lm, 5on6:AN, 5on6:DO, 8oo0:Lm, 7osa:eL40, 7osm:eL40, 8p8m:RO, 8p8n:RO, 8p8u:RO, 8pfr:RO, 7pzy:AN, 7q08:AN, 7q0f:AN, 7q0p:AN, 7q0r:AN, 8q5i:AN, 6q8y:AO, 6qik:t, 6qt0:t, 6qtz:t, 6r84:o, 6r86:o, 6r87:o, 7r81:o1, 6ri5:t, 7rr5:Lm, 6s47:Ao, 6snt:ad, 6sv4:AO, 6sv4:XO, 6sv4:zO, 6t4q:Lm, 5t62:z, 5t6r:z, 6t7i:Lm, 6t7t:Lm, 6t83:mb, 6t83:X, 5tbw:AN, 5tbw:DO, 6tb3:AO, 5tga:Q0, 5tga:q0, 5tgm:Q0, 5tgm:q0, 6tnu:AO, 7too:AL40, 7top:AL40, 4u3m:Q0, 4u3m:q0, 4u3n:Q0, 4u3n:q0, 4u3u:Q0, 4u3u:q0, 4u4n:Q0, 4u4n:q0, 4u4o:Q0, 4u4o:q0, 4u4q:Q0, 4u4q:q0, 4u4r:Q0, 4u4r:q0, 4u4u:Q0, 4u4u:q0, 4u4y:Q0, 4u4y:q0, 4u4z:Q0, 4u4z:q0, 4u50:Q0, 4u50:q0, 4u51:Q0, 4u51:q0, 4u52:Q0, 4u52:q0, 4u53:Q0, 4u53:q0, 4u55:Q0, 4u55:q0, 4u56:Q0, 4u56:q0, 4u6f:Q0, 4u6f:q0, 6uz7:Bm, 4v6i:Bp, 4v88:Bm, 4v88:Dm, 4v8t:m, 4v8y:Bm, 4v8z:Bm, 4v91:m, 6woo:m, 6xiq:m, 8y0u:Lm, 7z3n:Lm, 7z3o:Lm, 6z6j:Lm, 6z6k:Lm, 7zpq:Bl, 7zrs:Bl, 7zs5:Bn, 7zuw:Bl, 7zux:El, 7zw0:Lp

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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