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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GMSTQYWEEEIEIMSREKLQELQLQRLKKTINIAANSPYYKEVFSKNGITGDSIQSLDDIRKIPFTTKSDMRANYPFGLV
AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV
PAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGM
TEMNGPGVAFECQEQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTLDREMMPLIRYRTRDLTRILPGKCPCGRTH
LRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELSDLSTDNYIELEKIRRDIIRQ
LKDEILVTPKVKLVKKGSLPQSEAVRVKDLRDN

The query sequence (length=433) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4r1m:A 435 435 1.0000 0.9954 0.9954 0.0 4r1l:A, 4r1l:B, 4r1l:C, 4r1l:D, 4r1m:B, 4r1m:C, 4r1m:D, 4rvn:A, 4rvn:B, 4rvn:C, 4rvn:D, 4rvo:A, 4rvo:B, 4rvo:C, 4rvo:D
2 2y4o:A 433 430 0.4319 0.4319 0.4349 2.32e-124 2y4o:B
3 2y27:B 427 427 0.4157 0.4215 0.4215 9.26e-118 2y27:A, 2y4n:A, 2y4n:B
4 6he0:A 477 445 0.3326 0.3019 0.3236 5.40e-64 6hdw:A, 6hdx:A, 6hdy:A, 6he2:A, 6he2:B
5 6six:B 437 349 0.2263 0.2243 0.2808 3.64e-30 6siw:A, 6siw:B, 6six:A, 6siy:A, 6siy:B, 6siz:A, 6siz:B, 6tm4:AAA, 6tm4:BBB, 6wuq:A, 6wuq:B
6 4wv3:B 518 296 0.1801 0.1506 0.2635 9.76e-10 4wv3:A
7 7kdn:A 622 398 0.2009 0.1399 0.2186 3.24e-06 7kdn:B, 7kdn:C, 7kdn:D, 7kdn:E, 7kdn:F
8 4rlf:B 519 281 0.1663 0.1387 0.2562 4.91e-06 6m2t:A, 6m2t:B, 6m2t:C, 6m2t:D, 6m2u:A, 6m2u:B, 4rlf:A, 4rlq:A, 4rlq:B, 4rm2:A, 4rm2:B, 4rm3:A, 4rm3:B, 4rmn:A, 4rmn:B, 4zjz:A, 4zjz:B
9 8w0b:A 667 359 0.1778 0.1154 0.2145 5.27e-05 7kds:A, 8v4o:A, 8v4o:B, 8v4o:C, 8v4p:A, 8v4p:B, 8v4p:C, 8v4r:A, 8v4r:B, 8v4r:C, 8w0b:B, 8w0b:C, 8w0c:A, 8w0c:B, 8w0c:C, 8w0d:A, 8w0d:B, 8w0d:C, 8w0h:A, 8w0h:B, 8w0h:C, 8w0j:A, 8w0j:B, 8w0j:C, 8w0l:A, 8w0l:B, 8w0l:C, 8w0m:A, 8w0m:B, 8w0m:C
10 8wev:A 486 170 0.1201 0.1070 0.3059 1.96e-04 8wev:B
11 7l4g:B 668 294 0.1801 0.1168 0.2653 2.36e-04 9c8s:A, 9c8s:B, 9c8s:C, 8eps:A, 8eps:B, 8eps:C, 8g0r:A, 8g0r:B, 8g0r:C, 8g0s:A, 8g0s:B, 8g0s:C, 8g0t:A, 8g0t:B, 8g0t:C, 8g0u:A, 8g0u:B, 8g0v:A, 8g0v:B, 8g0v:C, 5ifi:A, 5ifi:B, 5ifi:C, 5k85:A, 5k85:B, 5k85:C, 5k8f:A, 5k8f:B, 5k8f:C, 7kno:A, 7kno:B, 7kno:C, 7knp:A, 7knp:B, 7knp:C, 7l4g:A, 7l4g:C, 5u29:A, 5u29:B, 5u29:C, 8v5g:A, 8v5g:B
12 3pbk:A 555 103 0.0670 0.0523 0.2816 5.39e-04 3pbk:B
13 7kvy:A 633 386 0.1871 0.1280 0.2098 0.001 7kcp:A, 7kq6:A, 7kq6:B, 7kq6:C, 7kqz:A, 7l3p:A, 7l3q:A, 7l3q:B, 7l3q:C
14 6e97:B 537 321 0.1640 0.1322 0.2212 0.002 6e8o:A, 6e8o:B, 6e97:A
15 8rwj:D 676 131 0.0878 0.0562 0.2901 0.010 8rwj:I, 8rwj:A, 8rwj:B, 8rwj:C, 8rwj:E, 8rwj:F, 8rwj:G, 8rwj:H, 1ry2:A
16 7thq:B 505 317 0.1778 0.1525 0.2429 0.051 6o6e:B, 7thq:A
17 7a9j:A 503 173 0.0901 0.0775 0.2254 0.061 7a9i:A
18 5bsm:A 530 276 0.1386 0.1132 0.2174 0.075 5bsm:B, 5bsr:A, 5bst:A, 5bsu:A, 5bsv:A, 5bsw:A, 5bsw:B, 5u95:D, 5u95:B, 5u95:C
19 1wsv:A 371 174 0.0970 0.1132 0.2414 0.079 1wsv:B
20 3rg2:C 613 348 0.1686 0.1191 0.2098 0.080 6iyk:A, 6iyk:B, 6iyl:A, 6iyl:B, 4iz6:A, 4iz6:B, 8k5s:A, 8k5s:B, 8k5t:A, 8k5t:B, 3rg2:A, 3rg2:B, 3rg2:H, 3rg2:D, 3rg2:E, 3rg2:F, 3rg2:I, 3rg2:G, 3rg2:J
21 5ja2:A 1238 317 0.1594 0.0557 0.2177 0.17 5ja1:A, 5t3d:A
22 5wm3:A 537 283 0.1547 0.1248 0.2367 0.18 5wm2:A, 5wm4:A, 5wm5:A, 5wm6:A, 5wm7:A
23 8biq:A 562 281 0.1270 0.0979 0.1957 0.23 8biq:B, 8biq:C, 8biq:D, 8bit:A, 8bit:B
24 4gxq:A 506 190 0.1016 0.0870 0.2316 0.24 4fut:A, 4gxq:B, 4gxq:C, 4gxr:A
25 4ir7:A 508 24 0.0323 0.0276 0.5833 0.51
26 3e7w:A 508 207 0.1039 0.0886 0.2174 0.55 3e7x:A
27 8rpl:B 630 305 0.1640 0.1127 0.2328 1.2 8rpk:A, 8rpk:B, 8rpk:C, 8rpk:D, 8rpl:A, 8rpl:C, 8rpl:D
28 3r44:A 502 39 0.0300 0.0259 0.3333 2.1 5zrn:A, 5zrn:B
29 8et7:A 532 28 0.0300 0.0244 0.4643 2.1 8et8:A
30 2d1r:A 539 178 0.1016 0.0816 0.2472 2.8 2d1q:A, 2d1s:A, 2d1t:A
31 3a9v:A 528 113 0.0647 0.0530 0.2478 3.1 3ni2:A
32 8u2r:A 664 103 0.0624 0.0407 0.2621 3.2 8sf3:A, 8u2s:A, 8u2s:B, 8u2t:A, 8u2u:A
33 4v8l:D 2822 44 0.0462 0.0071 0.4545 3.5 4ce4:o, 6hiv:US, 6hiv:UT, 6hiw:US, 6hiw:UT, 6hiy:US, 6hiy:UT, 4v8l:E, 4v8l:F, 4v8l:A, 4v8l:B, 4v8l:C, 4v8v:A, 4v8v:B, 4v8v:C, 4v8v:D, 4v8v:E, 4v8v:F, 4v8w:D, 4v8w:E, 4v8w:F, 4v8w:A, 4v8w:B, 4v8w:C
34 8yyr:A 496 256 0.1363 0.1190 0.2305 3.7 7dq5:A, 7dq5:B, 7dq6:A, 7dq6:B, 6m01:A, 8yyq:A
35 3kxw:A 572 329 0.1594 0.1206 0.2097 3.8 3lnv:A
36 4dpv:Z 559 108 0.0624 0.0483 0.2500 4.2 1c8d:A, 1c8f:A, 1c8g:A, 1ijs:P, 1p5w:A, 4qyk:K, 4qyk:V, 4qyk:E, 4qyk:J, 4qyk:S, 4qyk:B, 4qyk:c, 4qyk:W, 4qyk:H, 4qyk:I, 4qyk:T, 4qyk:L, 4qyk:M, 4qyk:C, 4qyk:R, 4qyk:A, 4qyk:b, 4qyk:Y, 4qyk:d, 4qyk:F
37 7tmm:A 593 50 0.0346 0.0253 0.3000 4.5 7tmo:A, 7tmo:E, 7tmp:A, 7tmq:A, 7tmr:E, 7tms:E, 7tmt:E
38 3fcc:A 500 115 0.0831 0.0720 0.3130 4.7 3dhv:A, 3fce:A
39 3u16:B 437 151 0.0808 0.0801 0.2318 5.4 3o82:A, 3o82:B, 3o83:A, 3o83:B, 3o84:A, 3o84:B, 3u16:A, 3u17:A, 3u17:B
40 8cdb:A 306 88 0.0554 0.0784 0.2727 5.9 8cd8:A, 8cd8:C, 8cdb:B, 8cdb:C, 8cdb:D, 8cdb:E, 8cdb:F, 8cdb:G, 8cdb:H, 8cdb:I, 8cdb:J, 8cdb:K, 8cdb:L, 8cdb:M, 8cdb:N, 2cki:A, 2cki:B, 2j83:A, 2j83:B, 3lum:A, 3lum:B, 3lum:C, 3lum:D, 3lun:A, 3lun:B
41 8djk:B 281 80 0.0577 0.0890 0.3125 6.9 8djm:B
42 5x8f:B 485 29 0.0254 0.0227 0.3793 7.6 5buq:B, 5bur:A, 5bur:B, 5bus:A, 5bus:B, 5gtd:A, 5gtd:B, 5x8f:A, 5x8f:C, 5x8f:D, 5x8g:A, 5x8g:B, 5x8g:D, 5x8g:C
43 5zr2:C 198 44 0.0277 0.0606 0.2727 9.1 6m1x:C, 6m1x:D, 5zr2:A, 5zr2:B, 5zr2:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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