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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GMRYFHKQQAHFWKPVLNLDKLWTLIPEDKRDQYLKSASKETAPVIDTLAAGYGKILGKGRIPNVPVIVKARFVSKLAEE
KIRAAGGVVELIA

The query sequence (length=93) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4v6i:BO 149 93 1.0000 0.6242 1.0000 2.48e-64 8aaf:N, 8agt:N, 8agu:N, 8agv:N, 8agw:N, 8agx:N, 8agz:N, 5apn:a, 5apo:a, 7azy:S, 7b7d:LW, 8bip:La, 8bjq:La, 8bn3:N8, 8bqd:AR, 8bqx:AR, 7bt6:a, 7btb:a, 8ccs:M, 8cdl:M, 8cdr:M, 8ceh:M, 8cf5:M, 8cg8:M, 8cgn:M, 8civ:M, 8cku:M, 8cmj:M, 5dat:N8, 5dat:n8, 5dc3:N8, 5dc3:n8, 5dge:N8, 5dge:n8, 5dgf:N8, 5dgf:n8, 5dgv:N8, 5dgv:n8, 6elz:a, 8eub:Aa, 8evp:Aa, 8evq:Aa, 8evr:Aa, 8evs:Aa, 8evt:Aa, 8ewb:Aa, 8ewc:Aa, 5fci:N8, 5fci:n8, 5fcj:N8, 5fcj:n8, 6ft6:a, 5gak:c, 6gq1:a, 6gqb:a, 6gqv:a, 5h4p:a, 6hd7:c, 8hfr:aw, 6hhq:AB, 6hhq:DC, 5i4l:N8, 5i4l:n8, 6i7o:AR, 6i7o:XR, 3j6x:68, 3j6y:68, 3j77:78, 3j78:78, 3jct:a, 5jcs:a, 5juo:FA, 5jup:FA, 5jus:FA, 5jut:FA, 5juu:FA, 8k2d:La, 8k82:La, 5lyb:N8, 5lyb:n8, 5m1j:a5, 6m62:a, 5mc6:AR, 5mei:AB, 5mei:DC, 7mpi:Aa, 7mpj:Aa, 6n8j:a, 6n8k:a, 6n8l:a, 6n8m:n, 6n8n:n, 6n8o:n, 7n8b:Aa, 5ndg:N8, 5ndg:n8, 5ndv:N8, 5ndv:n8, 5ndw:N8, 5ndw:n8, 7nrc:Lc, 7nrd:Lc, 5obm:N8, 5obm:n8, 7of1:a, 7oh3:a, 7ohq:a, 7ohv:a, 6oig:a, 5on6:AB, 5on6:DC, 7osa:uL15, 7osm:uL15, 8p8m:RA, 8p8n:RA, 8p8u:RA, 8pfr:RA, 6q8y:AR, 6qik:N, 6qt0:N, 6qtz:N, 6r84:c, 6r86:c, 6r87:c, 6ri5:N, 7rr5:La, 6rzz:N, 6s05:N, 6s47:Ac, 6snt:ap, 6sv4:AR, 6sv4:XR, 6sv4:zR, 6t4q:La, 5t62:n, 5t6r:n, 6t7i:La, 6t7t:La, 6t83:ay, 6t83:L, 5tbw:AB, 5tbw:DC, 6tb3:AR, 5tga:N8, 5tga:n8, 5tgm:N8, 5tgm:n8, 6tnu:AR, 7too:AL28, 7top:AL28, 7u0h:a, 4u3m:N8, 4u3m:n8, 4u3n:N8, 4u3n:n8, 4u3u:N8, 4u3u:n8, 4u4n:N8, 4u4n:n8, 4u4o:N8, 4u4o:n8, 4u4q:N8, 4u4q:n8, 4u4r:N8, 4u4r:n8, 4u4u:N8, 4u4u:n8, 4u4y:N8, 4u4y:n8, 4u4z:N8, 4u4z:n8, 4u50:N8, 4u50:n8, 4u51:N8, 4u51:n8, 4u52:N8, 4u52:n8, 4u53:N8, 4u53:n8, 4u55:N8, 4u55:n8, 4u56:N8, 4u56:n8, 4u6f:N8, 4u6f:n8, 7ug6:a, 7uoo:a, 7uqb:a, 7uqz:a, 7v08:a, 4v4b:BV, 4v7f:N, 4v7h:BV, 4v7r:BY, 4v7r:DY, 4v88:Ba, 4v88:Da, 4v8t:a, 4v8y:Ba, 4v8z:Ba, 4v91:a, 6woo:a, 6xiq:a, 6xir:a, 8y0u:La, 6ylg:a, 6ylh:a, 6ylx:a, 6yly:a, 7z34:K, 6z6j:La, 6z6k:La, 7zpq:BZ, 7zrs:BZ, 7zs5:Bb, 7zuw:BZ, 7zux:EZ, 7zw0:Ld
2 5it7:aa 147 92 0.8925 0.5646 0.9022 2.11e-58 6uz7:Ba
3 8c3a:AB 148 93 0.7634 0.4797 0.7634 2.85e-50 8c3a:BV, 8cq7:AB, 8cq7:BV, 8cqw:AB, 8cqw:BV, 8cre:AB, 8cre:BV, 8oeq:AB, 8oeq:BV, 7pzy:AB, 7q08:AB, 7q0f:AB, 7q0p:AB, 7q0r:AB, 8q5i:AB
4 8pv1:La 108 93 0.5914 0.5093 0.5914 7.73e-41 8pv2:La, 8pv3:La, 8pv4:La, 8pv5:La, 8pv6:La, 8pv7:La, 8pv8:La, 8pvk:La, 8pvl:La
5 7olc:La 148 93 0.5914 0.3716 0.5914 2.79e-40 7old:La, 8oo0:La, 7z3n:La, 7z3o:La
6 7r81:c1 148 93 0.5806 0.3649 0.5806 1.06e-38
7 8eug:a 147 93 0.6022 0.3810 0.6022 4.84e-37 8esq:a, 8eui:a
8 8esr:a 97 91 0.5591 0.5361 0.5714 3.82e-34 8etc:a, 8etg:a, 8etj:a
9 8ip8:IA 144 93 0.4839 0.3125 0.4839 3.66e-28 8ipa:IA, 8ipb:IA, 8jiv:Ca
10 8br8:Lb 148 92 0.4409 0.2770 0.4457 1.30e-26 8brm:Lb, 8bsi:Lb, 8bsj:Lb, 8btd:Lb, 8btr:Lb, 8fru:a, 7pwg:a, 7pwo:a2
11 8fl2:LK 117 93 0.4731 0.3761 0.4731 1.56e-26 8fkp:LK, 8fkq:LK, 8fkr:LK, 8fks:LK, 8fkt:LK, 8fku:LK, 8fkv:LK, 8fkw:LK, 8fkx:LK, 8fky:LK, 8fkz:LK, 8fl3:LK, 8fl4:LK, 8ink:L, 8ipd:L, 8ipx:L, 8ipy:L, 8ir1:L
12 7a01:q2 147 93 0.4839 0.3061 0.4839 2.71e-26 8a3d:U, 5aj0:Aa, 8b5l:a, 8b6c:a, 9bdl:AL28, 9bdn:AL28, 9bdp:AL28, 7bhp:La, 8bhf:N1, 8bpo:Z2, 8btk:Ba, 7cpu:La, 7cpv:La, 4d5y:a, 4d67:a, 6d90:a, 6d9j:a, 9f1b:Ba, 9f1c:Ba, 9f1d:Ba, 7f5s:La, 8fl6:LK, 8fl7:LK, 8fl9:LK, 8fla:LK, 8flb:LK, 8flc:LK, 8fld:LK, 8fle:LK, 8flf:LK, 6frk:a, 6ftg:a, 6fti:a, 6ftj:a, 8g5y:La, 8g5z:La, 8g60:La, 8g61:La, 8g6j:La, 8glp:La, 6gz3:Aa, 6gz4:Aa, 6gz5:Aa, 6hcf:a3, 6hcj:a3, 6hcm:a3, 6hcq:a3, 8idt:L, 8idy:L, 8ifd:2U, 8ife:2U, 8ine:L, 8inf:L, 6ip5:2U, 6ip6:2U, 6ip8:2U, 8ir3:L, 3j7o:a, 3j7p:a, 3j7q:a, 3j7r:a, 3j92:a, 3jag:a, 3jah:a, 3jai:a, 3jaj:a, 3jan:a, 8jdj:f, 8jdk:f, 8jdl:f, 8jdm:f, 8k2c:La, 5lks:La, 6lqm:L, 6lsr:L, 6lss:L, 7ls1:U2, 7ls2:U2, 6lu8:L, 5lzs:a, 5lzt:a, 5lzu:a, 5lzv:a, 5lzw:a, 5lzx:a, 5lzy:a, 5lzz:a, 7mdz:a, 6mtb:a, 6mtc:a, 6mtd:a, 6mte:a, 7nfx:a, 7nwg:a3, 7nwh:a, 7nwi:a, 7o7y:Ba, 7o7z:Ba, 7o80:Ba, 7o81:Ba, 7obr:a, 8ohd:La, 8oj0:La, 8oj5:La, 8oj8:La, 6ole:b, 6olf:b, 6olg:Aa, 6oli:b, 6olz:Aa, 6om0:b, 6om7:b, 7ow7:U, 7oyc:a1, 7oyd:a, 8p2k:Ba, 6p5i:Aa, 6p5j:Aa, 6p5k:Aa, 6p5n:Aa, 8q7z:Ba, 8q87:Ba, 8qfd:a, 7qgg:b, 8qoi:La, 7qvp:La, 7qvp:Ma, 7qwq:a, 7qwr:a, 7qws:a, 6qzp:La, 6r5q:a, 6r6g:a, 6r6p:a, 6r7q:a, 8rjb:a, 8rjc:a, 8rjd:a, 8scb:a, 6sgc:a2, 6swa:Y, 5t2c:U, 6t59:a3, 7tm3:a, 7toq:AL28, 7tor:AL28, 7tut:a, 7ucj:a, 7uck:a, 4ug0:La, 4ujc:Ba, 4ujd:Aa, 4uje:Ca, 4v6x:Ca, 6w6l:b, 6xa1:La, 7xnx:La, 7xny:La, 8xsx:La, 8xsy:La, 8xsz:La, 6y0g:La, 8y0w:La, 8y0x:La, 6y2l:La, 6y57:La, 6y6x:La, 8yoo:La, 8yop:La, 6z6l:La, 6z6m:La, 6z6n:La, 7zjw:Ld, 7zjx:Ld, 6zm7:La, 6zme:La, 6zmi:La, 6zmo:La, 6zvk:q2
13 8ie3:L 131 93 0.4731 0.3359 0.4731 3.15e-26
14 7oya:a1 147 93 0.4946 0.3129 0.4946 4.56e-26 7oyb:a1
15 7qiw:c 147 94 0.5054 0.3197 0.5000 5.37e-26 7qiz:c
16 5xxb:Z 145 95 0.5054 0.3241 0.4947 1.48e-25
17 8azw:f 147 94 0.5054 0.3197 0.5000 2.11e-25 8b2l:f3
18 4v8p:BK 148 93 0.4839 0.3041 0.4839 2.64e-25 4v8p:CK, 4v8p:EK, 4v8p:GK
19 9bh5:Ca 144 93 0.4624 0.2986 0.4624 5.50e-25 9cai:Ca
20 4v6w:Ca 149 93 0.5054 0.3154 0.5054 1.89e-24 6xu6:Ca, 6xu7:Ca, 6xu8:Ca
21 8ova:Bb 144 93 0.5054 0.3264 0.5054 6.28e-24 8ove:Bb, 5t5h:b, 4v8m:Bb
22 3j79:O 147 94 0.4516 0.2857 0.4468 7.71e-23 3jbn:AO, 3jbo:AO, 3jbp:AO, 8tpu:AO, 5umd:O
23 5xy3:a 149 94 0.4301 0.2685 0.4255 9.65e-23
24 4v5z:Bl 122 82 0.4301 0.3279 0.4878 4.96e-22
25 4v3p:LO 144 94 0.4624 0.2986 0.4574 3.72e-21 4v7e:Ca
26 8a3w:L 144 93 0.4731 0.3056 0.4731 3.95e-20 8a98:L, 6az3:L, 3jcs:L, 8ovj:L, 8rxh:LL, 8rxx:LL, 5t2a:Z
27 6zj3:La 151 93 0.3978 0.2450 0.3978 4.77e-13
28 7qep:N8 146 87 0.3011 0.1918 0.3218 2.41e-10
29 8p5d:LAA 147 88 0.3441 0.2177 0.3636 5.33e-10 8p60:LAA, 8p60:KAA, 7qca:LAA
30 6rm3:LAA 148 87 0.3226 0.2027 0.3448 6.91e-10
31 6zu5:LAA 145 88 0.2796 0.1793 0.2955 4.23e-08
32 6skf:BO 148 96 0.3871 0.2432 0.3750 4.11e-07 6skg:BO, 6th6:BO
33 4v4n:AL 147 55 0.2366 0.1497 0.4000 6.51e-04 4v6u:BL
34 7s9u:L 130 79 0.3226 0.2308 0.3797 0.027 6ppf:L, 6ppk:L, 7sae:L
35 7aqc:L 146 79 0.3226 0.2055 0.3797 0.028 7aqd:L, 7as8:P, 7as9:P, 8buu:L, 6ha1:L, 6ha8:L, 6htq:L, 3j3v:L, 3j3w:L, 3j9w:BO, 5njt:e, 7o5b:i, 7ope:P, 8qcq:L, 7qgu:L, 7qh4:L, 8qpp:i, 7qv1:L, 7qv2:L, 7qv3:L, 8r55:i, 8s1p:L, 8s1u:L, 6tnn:e, 6tpq:e
36 8hku:L15P 94 49 0.1613 0.1596 0.3061 0.071 8hkv:L15P, 8hky:L15P, 8hkz:L15P, 8hl1:L15P, 8hl2:L15P, 8hl3:L15P, 8hl4:L15P, 8hl5:L15P
37 4v9f:L 149 42 0.1828 0.1141 0.4048 0.11 3cc2:L, 3cc4:L, 3cc7:L, 3cce:L, 3ccj:L, 3ccl:L, 3ccm:L, 3ccq:L, 3ccr:L, 3ccs:L, 3ccu:L, 3ccv:L, 3cd6:L, 3cma:L, 3cme:L, 3cpw:K, 3cxc:K, 1ffk:J, 3g4s:L, 3g6e:L, 3g71:L, 3i55:L, 3i56:L, 1jj2:K, 1k73:M, 1k8a:M, 1k9m:M, 1kc8:M, 1kd1:M, 1kqs:K, 1m1k:M, 1m90:M, 1n8r:M, 1nji:M, 2otj:L, 2otl:L, 3ow2:K, 1q7y:M, 1q81:M, 1q82:M, 1q86:M, 2qa4:L, 2qex:L, 1qvf:K, 1qvg:K, 1s72:L, 4v4p:AO, 4v4r:BP, 4v4s:BP, 4v4t:BP, 1vq4:L, 1vq5:L, 1vq6:L, 1vq7:L, 1vq8:L, 1vq9:L, 1vqk:L, 1vql:L, 1vqm:L, 1vqn:L, 1vqo:L, 1vqp:L, 1w2b:K, 1yhq:L, 1yi2:L, 1yij:L, 1yit:L, 1yj9:L, 1yjn:L, 1yjw:L
38 7nhk:O 146 50 0.2043 0.1301 0.3800 0.90 6o8w:M, 6o8x:M, 6o8y:M, 6o8z:M, 6o90:M, 7p7q:O, 7p7r:O, 7p7s:O, 7p7t:O, 7p7u:O, 6w6p:M, 6wu9:M
39 3sqg:B 431 48 0.1828 0.0394 0.3542 1.3 3sqg:E, 3sqg:H
40 8hku:L18E 112 36 0.1935 0.1607 0.5000 1.4 8hkv:L18E, 8hky:L18E, 8hkz:L18E, 8hl1:L18E, 8hl2:L18E, 8hl3:L18E, 8hl4:L18E, 8hl5:L18E
41 7vpp:A 904 41 0.1505 0.0155 0.3415 3.4 6buy:A, 6bv0:A, 6bv1:A, 6bv2:A, 6bv3:A, 6bv4:A, 4f5c:A, 4f5c:B, 4fke:A, 4fkh:A, 4fkk:A, 4hom:A, 5lds:D, 5lds:A, 5lds:B, 5lds:C, 5lg6:A, 5lg6:B, 4naq:A, 4nz8:A, 4ou3:A, 7vpp:C, 5z65:A
42 5mmi:M 185 38 0.1720 0.0865 0.4211 3.4 6eri:AL, 5h1s:N, 5mlc:N, 5mmm:M, 5x8p:M, 5x8t:M
43 4fe3:A 291 38 0.1398 0.0447 0.3421 4.5 2g06:A, 2g06:B, 2g07:A, 2g07:B, 2g08:A, 2g08:B, 2g09:A, 2g09:B, 2g0a:A, 2g0a:B, 2jga:A, 4kx3:A, 4kx5:A, 2vkq:A
44 9c4g:k 144 78 0.2688 0.1736 0.3205 5.7 8crx:k, 8cvm:k
45 6xxg:BBB 539 26 0.1505 0.0260 0.5385 6.0 2o1x:C, 2o1x:D
46 6xxg:AAA 560 26 0.1505 0.0250 0.5385 6.3 6ouw:A
47 6ouv:A 595 26 0.1505 0.0235 0.5385 6.4 2o1x:A, 2o1x:B, 6ouv:B, 8v9i:A, 8v9i:B
48 8er8:A 330 17 0.1075 0.0303 0.5882 6.9
49 5m1t:A 247 40 0.1290 0.0486 0.3000 7.9 5m1t:B
50 3rg1:J 599 23 0.1290 0.0200 0.5217 8.7 3rg1:A, 3rg1:E, 3rg1:I, 3rg1:M, 3rg1:N
51 7zbp:A 239 35 0.1613 0.0628 0.4286 9.2 5fuj:A, 5fuj:B, 5fuk:A, 5fuk:B, 7zbp:B, 7zbp:C, 7zbp:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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