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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GMRQGAGLGYRRDLAEGFLQLRNNDRIQFMEIAPENWIKMGGFARYQFDKVAEKIPILIHGLSLSLGGQAPLDKELLSSI
KAMIKQYNTPFFSDHLSFLLPMPFTDEAVKHTAARIREVQDFLEIQISVENTSYYLHSETSTMNEVEFLNAIVQEANCGI
HLDVNNIYVNAVNHGLLDPHVFIDNVDLKRVNYIHIAGTVWDLLEYTYARLSHMPPTLLERFPPFEKLCKEVDIIHQLQQ
KYVKKRGLSWLKI

The query sequence (length=253) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3bww:A 253 253 1.0000 1.0000 1.0000 0.0
2 8hi7:B 295 168 0.1818 0.1559 0.2738 3.55e-15 8hi8:B
3 7dz9:B 260 57 0.0711 0.0692 0.3158 0.43 7dz9:A
4 8evu:E 198 65 0.0791 0.1010 0.3077 1.00 8a1t:E, 8a1u:E, 8a1v:E, 8a1w:E, 8a1x:E, 8a1y:E, 8acw:E, 8acy:E, 8ad0:E, 8ew3:E, 7xk3:E, 7xk4:E, 7xk5:E, 7xk6:E, 7xk7:E
5 3oc4:A 422 114 0.1146 0.0687 0.2544 1.5 3oc4:B
6 5yli:B 309 94 0.1067 0.0874 0.2872 3.1 5yli:A, 5ylk:B, 5ylk:A, 5yll:B, 5yll:A, 5z4t:B, 5z4t:A
7 6w5r:A 1194 121 0.1225 0.0260 0.2562 4.2 3gki:A, 3gkj:A, 6w5s:A, 6w5t:A, 6w5u:A, 6w5v:A
8 6uox:A 1161 121 0.1225 0.0267 0.2562 4.6
9 3jd8:A 1133 121 0.1225 0.0274 0.2562 4.8
10 6fnu:A 296 24 0.0514 0.0439 0.5417 7.1
11 2qa5:B 234 51 0.0553 0.0598 0.2745 9.1 2qa5:A, 2qag:A, 2qnr:A
12 8i0w:J 571 25 0.0514 0.0228 0.5200 9.9 7dvq:J, 8i0u:J, 8i0v:J, 6icz:J, 6id0:J, 6id1:J, 6qdv:S, 7w59:J, 7w5a:J, 7w5b:J, 5xjc:J, 5yzg:J, 5z56:J, 5z57:J, 5z58:J

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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