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BioLiP
>protein
GMPTPTFLVCPDVVKFENVGQIAVVNGMVYLGGSVGIDKSGTLHKGLEEQTRQTFDNIRKCLEYANSGLDYIVSLNIFLS
TSLSDSEEARFNELYREVFCVPATRPCRCCVRAQLQEGLLVEVVNVVAAQK

The query sequence (length=131) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3i3f:A 131 131 1.0000 1.0000 1.0000 3.21e-95 3i3f:B, 3i3f:C
2 7cd4:A 124 103 0.2672 0.2823 0.3398 3.49e-11 7cd4:C
3 8yrc:A 125 102 0.2519 0.2640 0.3235 9.21e-10
4 3k0t:C 124 97 0.2595 0.2742 0.3505 1.91e-07 3k0t:A, 3k0t:B
5 5v4d:A 127 101 0.2519 0.2598 0.3267 3.18e-07 5v4d:B, 5v4d:E
6 2uyk:C 127 102 0.2061 0.2126 0.2647 2.96e-05 2uyn:A, 2uyn:B, 2uyn:C
7 3vcz:B 127 100 0.2061 0.2126 0.2700 0.005
8 7ov8:A 303 53 0.1374 0.0594 0.3396 0.024 7ov2:A, 7ov3:A, 5uq6:A, 1ute:A
9 1qhw:A 300 53 0.1374 0.0600 0.3396 0.33 1qfc:A
10 1war:A 310 53 0.1298 0.0548 0.3208 2.6 2bq8:X
11 1clv:A 471 57 0.1527 0.0425 0.3509 3.5 1jae:A, 1tmq:A, 1viw:A
12 4lox:A 300 39 0.1145 0.0500 0.3846 6.3 5e5o:A, 5e5s:A, 5e63:A, 5e67:A, 4z1z:A, 4z1z:B, 4z20:A, 4z20:D
13 7oik:A 4426 69 0.1527 0.0045 0.2899 7.2 7oim:A, 6tax:A, 6tay:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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