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BioLiP
>protein
GMMNETLKVIAERYSCRDFKNEMPSDELLQAIAEAAIQAPSGMNRQAWRVIVVKNKELMQEMEAEGLAYLAGMEDQSSYN
RIMERGGRLFYGAPCMIVVPIDPTQYGPALVDCGILCQTIALAATSLGIANIMCGYTGLAFASGLRAEEFSKRLGFPEGY
AFGCSVLLGHANTTKPPHVPDKDKITYVE

The query sequence (length=189) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3pxv:B 189 189 1.0000 1.0000 1.0000 1.77e-142 3pxv:A, 3pxv:C, 3pxv:D
2 5j62:B 209 133 0.2275 0.2057 0.3233 1.10e-18 5j62:A
3 3ek3:A 187 169 0.2804 0.2834 0.3136 4.56e-17
4 4dn2:A 191 137 0.2222 0.2199 0.3066 6.95e-11 4dn2:B
5 3eo8:A 219 219 0.2963 0.2557 0.2557 2.25e-10 3eo8:B, 3eo8:C, 3eo8:D, 3eo8:E, 3eo8:F
6 3gr3:A 226 207 0.2857 0.2389 0.2609 2.44e-10 3gr3:B
7 3koq:A 173 192 0.2698 0.2948 0.2656 2.71e-10 3h4o:A, 3koq:B, 3koq:C, 3koq:D
8 5j6c:A 173 171 0.2116 0.2312 0.2339 1.25e-09 5j6c:B
9 3gag:A 206 78 0.1746 0.1602 0.4231 9.69e-09 3gag:B, 3gag:C, 3gag:D
10 3m5k:A 168 156 0.2169 0.2440 0.2628 1.64e-08 3m5k:B
11 3kwk:A 168 185 0.2540 0.2857 0.2595 1.76e-08
12 3gfa:A 197 48 0.1217 0.1168 0.4792 1.97e-08 3gfa:B
13 5hdj:B 248 200 0.3069 0.2339 0.2900 5.76e-08 5hdj:A
14 4g8s:A 182 140 0.2116 0.2198 0.2857 1.09e-07 4g8s:B
15 3e39:A 175 135 0.2011 0.2171 0.2815 5.51e-07 3e39:B
16 5hei:A 246 194 0.2857 0.2195 0.2784 1.01e-06 5hei:B, 5hei:C, 5hei:D, 5hei:E, 5hei:F, 5hei:G, 5hei:H
17 1zch:A 249 201 0.2857 0.2169 0.2687 4.89e-06
18 3qdl:A 178 192 0.2434 0.2584 0.2396 1.29e-05 3qdl:B, 3qdl:C, 3qdl:D
19 8cqt:B 164 133 0.2063 0.2378 0.2932 1.34e-05 8cqt:A
20 1nox:A 200 44 0.0952 0.0900 0.4091 3.89e-05
21 2wzv:B 223 205 0.2857 0.2422 0.2634 4.19e-05 2wzv:A, 2wzw:A, 2wzw:B
22 4eo3:A 321 137 0.2011 0.1184 0.2774 5.87e-05 4eo3:B
23 8uc3:A 180 62 0.0952 0.1000 0.2903 6.07e-05 8uc3:B
24 6pz0:A 185 80 0.1323 0.1351 0.3125 6.33e-05 6pz0:B, 6q1b:A, 6q1b:B, 6q1l:A, 6q1l:B, 6tyk:A, 6tyk:B
25 4qlx:A 217 216 0.3122 0.2719 0.2731 6.79e-05 4qlx:B, 4qly:A, 4qly:B, 4qly:C, 4qly:D
26 1bkj:A 230 183 0.2646 0.2174 0.2732 1.26e-04 1bkj:B, 2bkj:A, 2bkj:B
27 7dp0:A 223 206 0.2646 0.2242 0.2427 1.40e-04 7dp0:B, 7dp1:A, 7dp1:B, 7dp2:A, 7dp2:B
28 5uu6:C 236 194 0.2487 0.1992 0.2423 1.74e-04 5uu6:A, 5uu6:B, 5uu6:D
29 3ge5:A 176 171 0.2646 0.2841 0.2924 2.67e-04 3ge5:B
30 2hay:D 222 51 0.1005 0.0856 0.3725 3.57e-04 2hay:A, 2hay:B, 2hay:C
31 2b67:A 201 157 0.1958 0.1841 0.2357 0.003 2b67:B, 2b67:C, 2b67:D
32 5ko8:B 218 76 0.1111 0.0963 0.2763 0.004 5ko7:A, 5ko8:A, 5krd:A, 5krd:B
33 3n2s:A 248 199 0.2487 0.1895 0.2362 0.004 3n2s:B, 3n2s:C, 3n2s:D
34 5ko7:B 200 54 0.0847 0.0800 0.2963 0.004
35 2isj:A 219 184 0.2540 0.2192 0.2609 0.005 2isj:B, 2isj:C, 2isj:D, 2isj:E, 2isj:F, 2isj:G, 2isj:H, 2isk:A, 2isk:B, 2isk:C, 2isk:D, 2isk:E, 2isk:F, 2isk:G, 2isk:H, 2isl:A, 2isl:B, 2isl:C, 2isl:D, 2isl:E, 2isl:F, 2isl:G, 2isl:H
36 3gbh:B 213 63 0.1005 0.0892 0.3016 0.006 3gbh:A, 3gbh:C, 3gbh:D
37 3ge6:A 210 52 0.0899 0.0810 0.3269 0.013 3ge6:B
38 3e10:B 167 56 0.0952 0.1078 0.3214 0.018 3e10:A
39 3gb5:A 185 55 0.0847 0.0865 0.2909 0.028 3to0:A, 3to0:B
40 2fre:A 200 41 0.0952 0.0900 0.4390 0.037 2fre:B
41 3tnz:A 222 59 0.0847 0.0721 0.2712 0.040 3gfd:A, 3gfd:B, 3gh8:A, 3gh8:B, 3gh8:C, 3gh8:D, 3gh8:E, 3gh8:F, 3gh8:G, 3gh8:H, 3tnz:B
42 4ttb:A 189 58 0.0847 0.0847 0.2759 0.042 4ttb:B
43 4ttc:A 220 59 0.0847 0.0727 0.2712 0.043 4ttc:B, 4ttc:C, 4ttc:D, 4ttc:E, 4ttc:F, 5yak:A, 5yak:F, 5yak:B, 5yak:C, 5yak:D, 5yak:E
44 7s14:B 223 60 0.0899 0.0762 0.2833 0.060 7ldq:A, 7rzl:A, 7rzl:B, 7rzp:A, 7rzp:B, 7s14:A, 7s14:C, 7s14:D, 7s1a:A, 7s1a:B, 7t2z:A, 7t2z:B, 7t33:A, 7t33:B
45 7jh4:A 223 85 0.1005 0.0852 0.2235 0.095 7jh4:B, 7jh4:C, 7jh4:D, 7jh4:E
46 6wt2:A 221 60 0.0952 0.0814 0.3000 0.12 6wt2:B, 6wt2:C, 6wt2:D
47 3bm1:A 177 97 0.1270 0.1356 0.2474 0.14 3bm1:B
48 8qyg:B 225 118 0.1217 0.1022 0.1949 0.14 8q5g:A, 8q5g:B, 8qyg:A
49 7tmf:B 183 97 0.1217 0.1257 0.2371 0.30 7tmf:A, 7tmg:A, 7tmg:B
50 2i7h:A 187 40 0.0741 0.0749 0.3500 0.70 2i7h:B, 2i7h:C, 2i7h:D
51 7vqk:A 195 32 0.0635 0.0615 0.3750 1.0 7vqk:B
52 1ywq:A 199 49 0.0794 0.0754 0.3061 1.5
53 2r01:A 195 183 0.2381 0.2308 0.2459 1.7
54 1v5y:A 217 55 0.0794 0.0691 0.2727 3.2 1v5y:B, 1v5z:A, 1v5z:B, 1vfr:A, 1vfr:B
55 4zla:A 485 53 0.0847 0.0330 0.3019 5.1 4zi6:A, 4zi6:B, 4zi6:C, 4zi6:D, 4zi6:E, 4zi6:F, 4zla:B, 4zla:C, 4zla:D, 4zla:E, 4zla:F
56 3b0h:A 536 84 0.1217 0.0429 0.2738 5.7 3b0h:B
57 8uu5:P 123 66 0.1058 0.1626 0.3030 6.1 8a57:Q, 8a5i:Q, 8a63:Q, 7nhn:Q, 8uu4:P, 8uu6:P, 8uu7:P, 8uu8:P, 8uu9:P, 8uua:P

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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