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BioLiP
>protein
GLVFNVVTQDMINKSTKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT

The query sequence (length=77) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1mnm:C 77 77 1.0000 1.0000 1.0000 8.00e-53 1mnm:D
2 1akh:B 78 62 0.8052 0.7949 1.0000 3.69e-41 1apl:C, 1apl:D, 1k61:A, 1k61:B, 1k61:C, 1k61:D, 1le8:B, 1yrn:B
3 1lfu:P 82 49 0.2078 0.1951 0.3265 1.78e-05 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B
4 4xrm:B 64 51 0.1948 0.2344 0.2941 5.96e-05 5bng:B, 5bng:A, 5eg0:A, 5ego:A, 8vts:B, 8vts:D, 8vtt:D, 4xrm:A, 4xrs:A, 4xrs:B
5 6fqp:A 67 51 0.2338 0.2687 0.3529 3.94e-04 6fqp:B, 6fqq:A, 6fqq:B, 6fqq:D, 6fqq:E
6 4egc:A 539 46 0.1948 0.0278 0.3261 6.65e-04
7 1zq3:P 68 53 0.2338 0.2647 0.3396 0.003
8 6yoz:AAA 400 43 0.1818 0.0350 0.3256 0.035 1ojj:A, 1ojj:B, 1ojk:A, 1ojk:B, 6yoz:BBB
9 3cmy:A 60 49 0.2078 0.2667 0.3265 0.37
10 5eea:G 63 53 0.2468 0.3016 0.3585 0.38 8byx:B, 8byx:J, 8byx:A, 8byx:K, 8byx:G, 8byx:L, 5edn:A, 5edn:B, 5edn:G, 5edn:J, 5eea:B, 5eea:A, 5eea:J, 5ef6:A, 5ef6:J, 5ef6:B, 5ef6:G, 5eg0:B, 5ego:B, 5no6:A, 5no6:B, 7psx:A, 7psx:B, 7psx:G, 7psx:J
11 2lkx:A 68 60 0.2468 0.2794 0.3167 0.65
12 4j19:A 77 74 0.3117 0.3117 0.3243 0.90 4j19:B
13 3a01:A 78 51 0.2208 0.2179 0.3333 1.2 3a01:E
14 1w3h:A 348 36 0.1818 0.0402 0.3889 1.5 1clx:A, 1clx:B, 1clx:C, 1clx:D, 1e5n:A, 1e5n:B, 1w2p:A, 1w2p:B, 1w2v:A, 1w2v:B, 1w32:A, 1w32:B, 1w3h:B
15 3d1n:I 150 59 0.2208 0.1133 0.2881 1.5 3d1n:K, 3d1n:J, 3d1n:L, 3d1n:M, 3d1n:N, 3d1n:O, 3d1n:P
16 2x0f:B 382 72 0.2597 0.0524 0.2778 1.9 2x0e:A, 2x0e:B, 2x0f:A
17 1ig7:A 58 53 0.2208 0.2931 0.3208 2.8
18 5zjr:A 64 35 0.1688 0.2031 0.3714 2.9 5zjq:A, 5zjs:A, 5zjt:A, 5zjt:E
19 3rkq:A 58 53 0.2208 0.2931 0.3208 3.0 3rkq:B
20 8gna:A 1188 58 0.2078 0.0135 0.2759 4.0
21 7y8t:A 1298 58 0.2078 0.0123 0.2759 4.0 8d9g:B, 7xsq:A, 7xsr:B, 7y8y:A
22 7y80:A 1218 58 0.2078 0.0131 0.2759 4.0 8gu6:A
23 7y84:A 1242 58 0.2078 0.0129 0.2759 4.1 7x7a:A, 7x7r:A, 7xc7:A, 7y83:A, 7y85:A
24 7xss:B 1282 58 0.2078 0.0125 0.2759 4.1 8d9f:B, 8d9h:B, 7x8a:A, 7xso:A, 7xsp:B, 7xt4:B
25 8d8n:B 1256 58 0.2078 0.0127 0.2759 4.1 8d9e:B, 8d9i:B, 7y81:A
26 2ld5:A 67 53 0.2208 0.2537 0.3208 4.3
27 2me6:A 71 51 0.2208 0.2394 0.3333 4.3
28 7y82:A 1341 58 0.2078 0.0119 0.2759 4.3
29 5flv:M 229 53 0.2208 0.0742 0.3208 4.4 5flv:A, 5flv:E, 5flv:I, 4s0h:A, 4s0h:B, 4s0h:E, 4s0h:F, 6wc2:N, 6wc2:M, 6wc2:O, 6wc5:I, 6wc5:N, 2x6u:A, 2x6v:A, 2x6v:B
30 2dfi:A 301 11 0.1299 0.0332 0.9091 4.4 2dfi:B, 6m00:A, 1wkm:A, 1wkm:B, 1xgm:A, 1xgm:B, 1xgn:A, 1xgn:B, 1xgs:A, 1xgs:B
31 4rbo:A 55 33 0.1558 0.2182 0.3636 4.4 4rbo:D
32 7xrc:C 134 45 0.1948 0.1119 0.3333 4.5 2xsd:C
33 5z6t:A 317 48 0.1948 0.0473 0.3125 4.9 5z6t:B
34 8jw0:l 253 35 0.1299 0.0395 0.2857 5.1
35 8d97:A 1600 58 0.2078 0.0100 0.2759 5.1
36 8pna:A 67 64 0.2338 0.2687 0.2812 6.2 8pm5:A, 8pm5:D, 8pm5:G, 8pm5:M, 8pm5:J, 8pm7:A, 8pm7:C, 8pm7:E, 8pm7:G, 8pmc:A, 8pmc:C, 8pmc:E, 8pmc:G, 8pmf:A, 8pmn:A, 8pmv:A, 8pmv:D, 8pmv:G, 8pmv:J, 8pn4:A, 8pn4:D, 8pn4:G, 8pn4:M, 8pn4:J, 8pnc:A, 8pnc:K, 8pnc:E, 8pnc:H
37 2f4m:A 295 18 0.1299 0.0339 0.5556 6.5 2f4o:A
38 1otw:A 255 18 0.1169 0.0353 0.5000 7.5 3hlx:A, 3hlx:D, 3hml:A, 3hml:B, 3hnh:A, 4ny7:A, 4ny7:B, 1otw:B
39 1nk2:P 77 53 0.2338 0.2338 0.3396 8.1 1nk3:P
40 6es3:K 72 33 0.1558 0.1667 0.3636 9.7 6es2:K, 6es2:L, 6es3:M, 5lty:K, 5lty:M, 5lux:K, 5lux:L, 7q3o:K, 7q3o:C, 7q3o:E, 7q3o:G, 7q4n:K, 7q4n:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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