Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GLFSQKSFLVLGFSNENESNIANIIKENAGKIMVADYAVVPLLGCEVEATVGEVVTNTWLVTCIDYQTLFDPKSNPLFTP
VPVMTGMTPLEDCVISFSQCAGAEKESLTFLANLLGASVQEYFVRKSNAKKGMFASTHLILKERGGSKYEAAKKWNLPAV
TIAWLLETARTGKRADESHFLIENST

The query sequence (length=186) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6rmm:D 190 190 0.9892 0.9684 0.9684 1.05e-134 6rmm:C, 3ueo:B, 3ueo:D, 3ueo:A, 3ueo:C
2 5u6k:E 191 190 0.8118 0.7906 0.7947 9.53e-111 5u6k:A, 5u6k:B, 5u6k:C, 5u6k:D
3 6rml:B 278 74 0.1505 0.1007 0.3784 7.10e-08
4 6rml:B 278 147 0.1828 0.1223 0.2313 0.16
5 6j0x:B 466 110 0.1559 0.0622 0.2636 0.016 6j0w:A, 6j0w:B, 6j0x:A, 6j0x:C, 6j0x:D
6 6hm3:A 183 47 0.0806 0.0820 0.3191 0.022 4bu0:A, 4bu1:A, 4bu1:B, 6hm4:A
7 2am1:A 454 68 0.1237 0.0507 0.3382 0.12 2am2:A, 3zm5:A, 3zm6:A
8 8fh4:B 297 39 0.0591 0.0370 0.2821 4.6 8cdw:A, 8cdw:B, 8cij:A, 6cqd:A, 6cqd:B, 6cqf:A, 8fh4:A, 8fh4:C, 8fh4:D, 8fjz:A, 8fjz:B, 8fjz:C, 8fjz:D, 8fjz:E, 8fjz:F, 8fko:A, 8fko:B, 8fko:C, 8fko:D, 8fko:E, 7kac:A, 7kac:B, 7l24:A, 7l24:B, 7l24:C, 7l24:D, 7l25:A, 7l25:B, 7l26:A, 7l26:B, 7l26:C, 7l26:D, 7m0k:A, 7m0k:B, 7m0k:C, 7m0k:D, 7m0l:A, 7m0l:B, 7m0l:C, 7m0l:D, 7m0m:A, 7m0m:B, 6nfy:A, 6nfy:B, 6nfz:A, 6nfz:B, 6ng0:A, 6ng0:B, 8par:A, 8pas:A, 8pas:B, 8pau:A, 8pau:B, 7r9l:A, 7r9n:A, 7r9n:B, 7r9p:A, 7r9p:B, 7r9t:A, 7r9t:B, 7siu:A, 7siu:B, 8xn7:A, 8xn7:B
9 8p0o:A 622 87 0.1022 0.0305 0.2184 5.3 8p0o:B, 8p0p:A, 8p0p:B, 8p0q:A, 8p0q:B
10 4r9x:A 225 38 0.0753 0.0622 0.3684 6.4 4r9x:B
11 9eq5:A 511 72 0.0968 0.0352 0.2500 7.7 9eq5:D, 9eq5:B, 9eq5:C
12 8ido:C 128 75 0.1075 0.1562 0.2667 9.1 8ido:D

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218