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BioLiP
>protein
GLAQFIKVNVTLENGEPVFIYTDANGQVCQGDITVTQAGTITYLLNDQTLKGLKFVGVGFVTPFDGIIDAVTISSDGMLV
QLVDLDKTPGTTKFQFVLSNTANTLLVLSAD

The query sequence (length=111) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3njh:D 122 111 0.9820 0.8934 0.9820 3.77e-73 3n55:A, 3njf:A, 3njf:C, 3njg:A, 3njh:A, 3njh:B, 3njh:C, 3nji:A, 3njj:A, 3njl:A, 3njn:A, 3njn:C
2 5hy7:B 1170 56 0.1622 0.0154 0.3214 0.24
3 6v7g:A 357 73 0.2072 0.0644 0.3151 0.62 1dgr:X, 1dgr:V, 1dgr:N, 1dgw:X, 6v7j:A, 6v7j:B, 6v7j:C, 6v7l:A, 6v7l:B, 6v7l:C
4 8tj5:M 1659 24 0.1171 0.0078 0.5417 1.1 8tj5:O
5 6qpw:A 183 75 0.1441 0.0874 0.2133 2.1
6 8i34:A 175 44 0.0991 0.0629 0.2500 3.1 8i34:C, 8i34:E, 8i34:G
7 3vmw:A 324 52 0.1441 0.0494 0.3077 5.6
8 1jl3:A 137 62 0.1622 0.1314 0.2903 7.7 1jl3:B, 1jl3:C, 1jl3:D
9 9f8x:A 572 45 0.1171 0.0227 0.2889 8.6 9f8x:B, 9f8x:C, 9f8x:D, 1qni:A, 1qni:B, 1qni:C, 1qni:D, 1qni:E, 1qni:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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