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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GKYVVVPETSQDMAFKCPICKETVTGVYDEESGEWVWKNTIEVNGKYFHSTCYHET

The query sequence (length=56) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2nax:A 76 56 1.0000 0.7368 1.0000 5.66e-38 5m9z:A
2 6j2p:A 98 44 0.2143 0.1224 0.2727 0.50 6j2p:B, 6j2p:D, 6j2p:C
3 2o10:A 60 39 0.2679 0.2500 0.3846 0.69
4 7tom:A 498 31 0.1786 0.0201 0.3226 2.0 7tol:A
5 7wmd:A 531 21 0.2143 0.0226 0.5714 2.4
6 7wmd:A 531 26 0.1964 0.0207 0.4231 5.0
7 7wmk:A 557 37 0.2857 0.0287 0.4324 2.5
8 7wmk:A 557 26 0.1964 0.0197 0.4231 5.0
9 7uoo:w 194 12 0.1607 0.0464 0.7500 2.7 5a53:A, 7bt6:w, 7btb:w, 6ft6:w, 3jct:w, 6m62:w, 7oh3:w, 7ohq:w, 7oht:w, 7ug6:w, 7uqb:w, 7uqz:w, 7v08:w
10 4cvb:A 562 37 0.2857 0.0285 0.4324 3.0 4cvc:A
11 6o9l:Q 430 18 0.1250 0.0163 0.3889 3.4 8bvw:W, 8byq:W, 7eg9:U, 7ega:U, 7egb:U, 7egc:U, 7ena:EA, 7enc:EA, 5gpy:A, 8gxq:EA, 8gxs:EA, 5iy6:Q, 5iy8:Q, 5iy9:Q, 5iya:Q, 5iyb:Q, 5iyc:Q, 5iyd:Q, 7lbm:Q, 7nvr:W, 7nvs:W, 7nvt:W, 7nvu:W, 7nvy:W, 7nvz:W, 7nw0:W, 8s51:W, 8s52:W, 8s54:W, 8s55:W, 8s5n:W, 1vd4:A, 8wak:U, 8wal:U, 8wan:U, 8wao:U, 8wap:U, 8waq:U, 8war:U, 8was:U
12 7r78:A 1880 22 0.1786 0.0053 0.4545 4.3
13 7r76:A 1834 22 0.1786 0.0055 0.4545 4.3 7r77:A
14 1y7b:A 534 26 0.1607 0.0169 0.3462 4.8 1y7b:B, 1y7b:C, 1y7b:D, 1yi7:A, 1yi7:B, 1yi7:C, 1yi7:D
15 5yna:A 1055 28 0.1607 0.0085 0.3214 5.8 2fgz:A, 2fh6:A, 2fh8:A, 2fhb:A, 2fhc:A, 2fhf:A, 6j33:A, 6j33:B, 6j34:A, 6j35:A, 6j35:B, 6j4h:A, 5yn2:A, 5yn7:A, 5ync:A, 5ynd:A, 5yne:A, 5ynh:A, 2yoc:A, 2yoc:B
16 1h98:A 77 45 0.2679 0.1948 0.3333 8.9
17 5lpi:C 134 35 0.1786 0.0746 0.2857 9.4 5lpi:D, 5lpi:A, 5lpi:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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