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BioLiP
>protein
GKVKKRLPQAKRACAKCQKDNKKCDDARPCQRCIKAKTDCIDLPRKKRPTGVRRGPYK

The query sequence (length=58) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6o19:A 59 58 1.0000 0.9831 1.0000 8.98e-35 6e33:A
2 6gys:B 579 31 0.1897 0.0190 0.3548 0.091 6f07:B, 6gyp:B, 6gys:C, 6gys:J, 6gys:I, 6gyu:B, 7k7g:M, 8ow1:CE
3 1ajy:A 71 36 0.2586 0.2113 0.4167 0.21 1ajy:B, 1zme:C, 1zme:D
4 1pyi:A 88 35 0.2241 0.1477 0.3714 2.2 1pyi:B
5 8y6b:D 517 22 0.1552 0.0174 0.4091 4.6 8hpy:D, 8hpy:E, 8hq0:D, 8hq0:E, 8hq0:F, 8hq1:D, 8hq1:E, 8hq1:F, 8hq2:D, 8hq2:E, 5y2z:J, 5y2z:B, 5y2z:D, 5y2z:F, 5y2z:H, 5y2z:L, 5y31:B, 5y31:D, 8y6b:F, 8y6b:E
6 3wpd:A 752 17 0.1207 0.0093 0.4118 4.7 3wpc:A, 3wpc:B, 5y3j:A, 5y3j:B, 5y3k:A, 5y3k:B, 5y3l:A, 5y3l:B
7 2je2:A 157 40 0.2586 0.0955 0.3750 5.0 8gar:A, 2je3:A
8 4e54:B 402 18 0.1379 0.0199 0.4444 6.5 4e5z:B, 6r8y:L, 6r8z:L, 6r90:L, 6r91:L, 6r92:L

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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