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BioLiP
>protein
GKSASGIIMETQQAKQTLADIEARHADIMKLETSIRELHDMFMDMAMLVESQGEMIDRIEYNVEAAVDYIETAKVDTKKA
VK

The query sequence (length=82) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1l4a:B 82 82 1.0000 1.0000 1.0000 4.77e-55
2 3hd7:B 98 68 0.6707 0.5612 0.8088 4.57e-35 3rk2:B, 5w5c:B
3 1fio:A 190 37 0.2195 0.0947 0.4865 7.34e-05
4 8qeo:A 2146 54 0.1829 0.0070 0.2778 0.18
5 8qen:A 2363 54 0.1829 0.0063 0.2778 0.18 9bja:A, 9bja:B, 2bvl:A, 2bvm:A, 6c0b:A, 7lou:A, 7lou:B, 7lov:A, 7lov:B, 3pa8:A, 3pa8:B, 3pee:B, 3pee:A, 7s0y:A, 5uqm:A, 5uqn:A, 5uqt:A, 5uqt:B
6 8y9b:B 1607 54 0.1829 0.0093 0.2778 0.24
7 8ew9:A 241 54 0.1829 0.0622 0.2778 2.9
8 6ywo:A 354 37 0.1463 0.0339 0.3243 3.1 6ywn:A, 6ywo:B, 6ywo:C, 6ywo:D
9 9fmd:M 224 48 0.1829 0.0670 0.3125 3.3 8c6j:y, 8i0u:M, 8i0v:M, 8i0w:M, 6icz:M, 6id0:M, 6id1:M, 5mqf:N, 6qdv:y, 8ro2:M, 7w59:M, 7w5a:M, 7w5b:M, 5xjc:M, 5yzg:M
10 3hrd:B 330 35 0.1463 0.0364 0.3429 5.0 3hrd:F
11 1kc7:A 872 43 0.1463 0.0138 0.2791 5.1
12 4gsk:B 572 49 0.1829 0.0262 0.3061 6.5 4gsk:A
13 4gsl:A 598 49 0.1829 0.0251 0.3061 6.5 4gsl:B, 3rui:A, 3t7e:A, 3t7g:B, 3t7g:A, 3vh1:A, 3vh2:A, 3vh3:A, 3vh4:A, 5yec:A, 5yec:C
14 8dqw:A 522 43 0.1707 0.0268 0.3256 7.7 8fs3:A, 8fs5:A, 8fs6:A, 8fs7:A, 8fs8:A, 7sgz:A, 7st9:A, 7stb:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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