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BioLiP
>protein
GKRKRCGVCEPCQQKTNCGECTYCKNRKNSHQICKKRKCEELKKK

The query sequence (length=45) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6asd:C 45 45 1.0000 1.0000 1.0000 4.31e-25
2 5vc9:C 46 44 0.7111 0.6957 0.7273 1.01e-15 5vc9:F
3 5w9s:C 44 43 0.6444 0.6591 0.6744 1.47e-14
4 4hp1:C 51 44 0.6889 0.6078 0.7045 2.93e-14 4hp3:C
5 5exh:C 45 44 0.6667 0.6667 0.6818 3.71e-13 4z3c:C
6 3pt6:B 915 50 0.5333 0.0262 0.4800 4.79e-04 4da4:A, 3pt6:A, 6w8v:A
7 4wxx:B 1178 50 0.4889 0.0187 0.4400 7.62e-04 3epz:A, 3epz:B, 7lmk:A, 7lmk:B, 7lmk:C, 7lmk:D, 7lmm:A, 7lmm:B, 7lmm:C, 7lmm:D, 3pta:A, 7sfc:A, 7sfd:A, 7sfe:A, 7sff:A, 7sfg:A, 5wvo:C, 4wxx:A, 6x9i:A, 6x9j:A, 6x9k:A, 7xi9:A, 7xib:A, 5ydr:B, 4yoc:A
8 3swr:A 965 50 0.4889 0.0228 0.4400 8.16e-04
9 2j2s:A 72 48 0.4222 0.2639 0.3958 0.024 2jyi:A, 2kkf:A, 4nw3:A
10 3qmb:A 54 23 0.2222 0.1852 0.4348 0.094 3qmc:A, 3qmd:A, 3qmg:A, 3qmh:A, 3qmi:A
11 5k1s:A 358 22 0.2000 0.0251 0.4091 0.29 5k1s:C, 5k1s:B, 5k1s:D
12 5w9q:A 56 21 0.1778 0.1429 0.3810 0.41 5w9q:B
13 3av4:A 1140 15 0.2444 0.0096 0.7333 0.50 3av5:A, 3av6:A, 4da4:B, 5gut:A, 5guv:A, 3pt9:A, 6w8v:B, 6w8w:A, 6w8w:B, 5wy1:A
14 4o64:A 116 27 0.3111 0.1207 0.5185 0.72 4o64:B, 4o64:C
15 1vj0:A 366 21 0.2222 0.0273 0.4762 0.81 1vj0:B, 1vj0:C, 1vj0:D
16 5x4z:N 1074 32 0.2667 0.0112 0.3750 0.95 5x4z:B, 5x51:B, 5x51:N
17 7xn7:B 1164 32 0.2667 0.0103 0.3750 1.1 6a5l:B, 6a5o:B, 6a5p:B, 6a5r:B, 6a5t:B, 6a5u:B, 8h0v:B, 8h0w:B, 8he5:B, 6inq:B, 6ir9:B, 6j4w:B, 6j4x:B, 6j4y:B, 6j4z:B, 6j50:B, 6j51:B, 8jh2:B, 8jh3:B, 8jh4:B, 7wbv:B, 7wbw:B, 7wbx:B, 5xog:B, 5xon:B, 7xse:B, 7xsx:B, 7xsz:B, 7xt7:B, 7xtd:B, 7xti:B, 8yfq:B, 8yfr:B
18 4cpd:A 346 19 0.1556 0.0202 0.3684 3.1 4cpd:B, 4cpd:C, 4cpd:D
19 5szo:B 414 17 0.2222 0.0242 0.5882 4.3 5szo:A, 5szp:A, 5szp:B
20 3ebe:C 177 23 0.2222 0.0565 0.4348 5.1 3ebe:A, 3ebe:B, 3h15:A
21 7aau:C 378 16 0.2000 0.0238 0.5625 5.5 7aas:A, 7aas:B, 7aas:C, 7aas:D, 7aas:E, 7aas:F, 7aau:A, 7aau:B, 7aau:D, 7aau:E, 7aau:F, 7av7:A, 7av7:B, 7av7:C, 7av7:D, 7av7:E, 7av7:F
22 1hcp:A 75 23 0.2667 0.1600 0.5217 5.6 4aa6:A, 4aa6:B, 4aa6:E, 4aa6:F, 1hcq:A, 1hcq:B, 1hcq:E, 1hcq:F
23 5wp5:A 463 12 0.1778 0.0173 0.6667 6.3 5wp5:B
24 6cnb:B 1114 22 0.2000 0.0081 0.4091 7.0 8bws:B, 6cnc:B, 6cnd:B, 6cnf:B, 6eu0:B, 6eu1:B, 6f40:B, 6f41:B, 6f42:B, 6f44:B, 5fj8:B, 5fja:B, 6tut:B, 7z0h:B, 7z1l:B, 7z1m:B, 7z1n:B, 7z1o:B, 7z2z:B, 7z30:B, 7z31:B
25 4pzi:A 61 47 0.3111 0.2295 0.2979 7.3
26 7arc:F 430 15 0.1556 0.0163 0.4667 7.6 7ard:F
27 3h0g:B 1150 28 0.2000 0.0078 0.3214 8.1 3h0g:N
28 6htk:A 384 37 0.2444 0.0286 0.2973 8.8 6htk:B, 6htm:A, 6htm:B, 6hto:A, 6hto:B, 4r33:A, 4r33:B, 4r34:A, 4r34:B
29 5wp4:A 485 12 0.1778 0.0165 0.6667 8.8
30 8qby:F 421 15 0.1556 0.0166 0.4667 9.0
31 4oh1:A 351 23 0.2000 0.0256 0.3913 9.0
32 7t2r:B 425 15 0.1556 0.0165 0.4667 9.3 7t2r:G, 7t30:B, 7t30:G
33 4dl9:A 379 26 0.2444 0.0290 0.4231 9.7 4dl9:B, 4dla:A, 4dla:B, 4dlb:A, 4dlb:B
34 9cc9:A 850 24 0.2222 0.0118 0.4167 9.9 9cc8:A, 9cc8:B, 9cc8:C, 9cc8:D, 9cc8:E, 9cc8:F, 9cc9:B, 9cc9:C, 9cc9:D, 9cc9:E, 9cc9:F, 9cc9:G, 9cc9:H, 9cc9:I, 9cc9:J, 9cc9:K, 9cc9:L

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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