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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GKKRKKKVYTTPKKIRHKHKKVKLAVLNYYKVDDEGKVAKLRKECPNCGPGIFLANHGDRFYCGKCHSTFATQK

The query sequence (length=74) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6fyx:f 74 74 1.0000 1.0000 1.0000 9.82e-50 6fyy:f, 6gsm:f, 6gsn:f, 8i7j:f, 5it7:f, 5it9:f, 3j80:f, 3j81:f, 3jam:f, 3jap:f, 8rw1:f, 8s8d:f, 8s8e:f, 8s8f:f, 8s8g:f, 8s8h:f, 8s8i:f, 8s8j:f
2 5dat:e1 76 72 0.7838 0.7632 0.8056 1.61e-28 7a1g:N, 7b7d:N, 8bn3:E1, 8bqd:N, 8bqx:N, 8cah:N, 8cas:O, 5dat:E1, 5dc3:E1, 5dc3:e1, 5dge:E1, 5dge:e1, 5dgf:E1, 5dgf:e1, 5dgv:E1, 5dgv:e1, 6eml:N, 8eub:Bf, 8evp:Bf, 8evq:Bf, 8evr:Bf, 8evs:Bf, 8evt:Bf, 8ewb:Bf, 8ewc:Bf, 5fci:E1, 5fci:e1, 5fcj:E1, 5fcj:e1, 6gq1:AW, 6gqb:AW, 6gqv:AW, 6hhq:g, 6hhq:e1, 5i4l:E1, 5i4l:e1, 6i7o:N, 6i7o:Nb, 3j6x:31, 3j6y:31, 3j77:31, 3j78:31, 5juo:CC, 5jup:CC, 5jus:CC, 5jut:CC, 5juu:CC, 8k2d:Sf, 8k82:Sf, 5lyb:E1, 5lyb:e1, 5m1j:f2, 5mc6:N, 5mei:e1, 5mei:g, 7mpi:Bf, 7mpj:Bf, 7n8b:Bf, 5ndg:E1, 5ndw:E1, 5ndw:e1, 7nrc:SN, 7nrd:SN, 5obm:E1, 5obm:e1, 5on6:e1, 5on6:g, 7osa:eS31, 6q8y:N, 6rbe:f, 7rr5:Sf, 6s47:Bg, 6snt:f, 6sv4:N, 6sv4:Nb, 6sv4:Nc, 6t4q:Sf, 6t7i:Sf, 6t7t:Sf, 6t83:fb, 6t83:6, 5tbw:g, 5tbw:e1, 6tb3:N, 5tga:E1, 5tga:e1, 5tgm:E1, 5tgm:e1, 6tnu:N, 4u3m:E1, 4u3m:e1, 4u3n:E1, 4u3n:e1, 4u3u:E1, 4u3u:e1, 4u4n:E1, 4u4n:e1, 4u4o:E1, 4u4o:e1, 4u4q:E1, 4u4q:e1, 4u4r:E1, 4u4r:e1, 4u4u:E1, 4u4u:e1, 4u4y:E1, 4u4y:e1, 4u4z:E1, 4u4z:e1, 4u50:E1, 4u50:e1, 4u51:E1, 4u51:e1, 4u52:E1, 4u52:e1, 4u53:E1, 4u53:e1, 4u55:E1, 4u55:e1, 4u56:E1, 4u56:e1, 4u6f:E1, 4u6f:e1, 6wdr:f, 5wyj:Sg, 8y0u:Sf, 6z6j:Sf, 6z6k:Sf, 6zce:g, 7zpq:Af, 7zrs:Af, 6zu9:O, 7zuw:Af, 7zux:Df, 6zvi:Q, 7zw0:sN
3 6uz7:f 44 57 0.5946 1.0000 0.7719 1.77e-24
4 7old:Sf 74 72 0.6757 0.6757 0.6944 2.14e-24 7olc:Sf, 8oo0:Sf, 7r81:g2, 7z3n:Sf, 7z3o:Sf
5 8c3a:h 70 69 0.6757 0.7143 0.7246 1.08e-23 8c3a:DS, 8cq7:h, 8cq7:DS, 8cqw:h, 8cqw:DS, 8cre:h, 8cre:DS, 8oeq:h, 8oeq:DS, 7pzy:g, 7q08:g, 7q0f:g, 7q0p:g, 7q0r:g
6 4v6w:Af 80 76 0.6892 0.6375 0.6711 3.06e-23 6xu6:Af, 6xu7:Af, 6xu8:Af
7 8g5z:Sf 75 72 0.6486 0.6400 0.6667 1.64e-22 7a01:Q3, 7a09:U, 5a2q:f, 5aj0:Bf, 8bhf:g3, 8btk:AC, 4d5l:f, 4d61:f, 6d90:gg, 6d9j:gg, 9f1b:AC, 9f1c:AC, 9f1d:AC, 6fec:p, 5flx:f, 6g18:f, 6g51:f, 6g53:f, 6g5h:f, 6g5i:f, 8g5y:Sf, 8g60:Sf, 8g61:Sf, 8g6j:Sf, 8glp:Sf, 6gz3:Bf, 6gz4:Bf, 6gz5:Bf, 6hcf:g1, 6hcj:g2, 6hcm:g1, 6hcq:g2, 8ifd:3R, 8ife:3R, 6ip5:3R, 6ip6:3R, 6ip8:3R, 3j7p:Sf, 3j7r:Sf, 3jag:ff, 3jah:ff, 3jai:ff, 3jaj:Sf, 3jan:Sf, 7jqb:g, 7jqc:g, 5k0y:p, 8k2c:Sf, 7k5i:f, 4kzx:f, 4kzy:f, 4kzz:f, 5lks:Sf, 7ls1:U3, 7ls2:U3, 5lzs:ff, 5lzt:ff, 5lzu:ff, 5lzv:ff, 5lzw:ff, 5lzx:ff, 5lzy:ff, 5lzz:ff, 7mdz:ff, 7mq8:NT, 7mq9:NT, 7mqa:NT, 6mtb:ff, 6mtc:ff, 6mtd:ff, 6mte:ff, 7nwg:g2, 7nwh:ff, 7nwi:ff, 7o7y:AC, 7o7z:AC, 7o80:AC, 7o81:AC, 5oa3:f, 6ole:Sf, 6olf:Sf, 6olg:Bf, 6oli:Sf, 6olz:Bf, 6om0:Sf, 6om7:Sf, 8oz0:p, 8p03:f, 8p09:f, 8p2k:AC, 6p4g:g, 6p4h:g, 6p5i:g, 6p5j:g, 6p5k:g, 6p5n:g, 8pj1:k, 8pj2:k, 8pj3:k, 8pj4:k, 8pj5:k, 8pj6:k, 8ppk:f, 8ppl:Af, 8q7z:AC, 8q87:AC, 7qgg:Sf, 8qoi:Sf, 7qp6:k, 7qp7:k, 6qzp:Sf, 7r4x:f, 6r5q:0, 6r6g:0, 6r6p:0, 6r7q:0, 8scb:ff, 6sgc:g1, 7syg:g, 7syh:g, 7syi:g, 7syj:g, 7syk:g, 7syl:g, 7sym:g, 7syn:g, 7syo:g, 7syp:g, 7syq:g, 7syr:g, 7sys:g, 7syt:g, 7syu:g, 7syv:g, 7syw:g, 7syx:g, 5t2c:AH, 8t4s:f, 7toq:AS31, 7tor:AS31, 7tql:g, 4ug0:Sf, 4ujc:Cf, 4ujd:Cf, 4uje:Bf, 4v6x:Af, 5vyc:f1, 5vyc:f2, 5vyc:f3, 5vyc:f4, 5vyc:f5, 5vyc:f6, 6w2s:g, 6w2t:g, 7wtt:f, 7wtu:f, 7wtv:f, 7wtw:f, 7wtz:f, 7wu0:f, 6xa1:Sf, 7xnx:Sf, 7xny:Sf, 8xsx:Sf, 8xsy:Sf, 8xsz:Sf, 8xxl:Sf, 8xxm:Sf, 8xxn:Sf, 6y0g:Sf, 6yal:f, 6yam:f, 6yan:f, 6ybs:k, 8yoo:Sf, 8yop:Sf, 6z6l:Sf, 6z6m:Sf, 6z6n:Sf, 7zjw:SD, 7zjx:SD, 6zlw:g, 6zm7:Sf, 6zme:Sf, 6zmi:Sf, 6zmo:Sf, 6zmt:g, 6zmw:k, 6zn5:g, 6zoj:f, 6zol:f, 6zon:U, 6zp4:U, 6zuo:f, 6zv6:f, 6zvh:f, 6zvj:U, 6zvk:Q3, 6zxd:f, 6zxe:f, 6zxf:f, 6zxg:f, 6zxh:f
8 4v88:Cf 76 48 0.4730 0.4605 0.7292 1.68e-20 4uer:9, 4v88:Af, 4v8y:A5, 4v8z:A5
9 4v92:Bf 64 47 0.4324 0.5000 0.6809 4.43e-18
10 9bh5:Af 50 50 0.3919 0.5800 0.5800 4.60e-18 9cai:Af
11 4bts:A9 93 54 0.4054 0.3226 0.5556 1.38e-17 4bts:B9, 4bts:C9, 4bts:D9
12 4v7e:Bf 71 68 0.6486 0.6761 0.7059 1.43e-17 8auv:N, 8b2l:N1, 8r57:f
13 4v5o:A9 98 54 0.4054 0.3061 0.5556 3.32e-17 4v5o:B9
14 8rxh:Sf 80 70 0.4459 0.4125 0.4714 2.16e-16 6az1:f
15 6zj3:Sf 64 64 0.5000 0.5781 0.5781 2.44e-16
16 7ase:j 79 62 0.4459 0.4177 0.5323 6.10e-15 5opt:j, 8ova:A9, 4v8m:A9
17 6woo:ff 44 55 0.4189 0.7045 0.5636 1.18e-13 8ccs:8, 8cdl:8, 8cdr:8, 8ceh:8, 8cf5:8, 8cg8:8, 8cgn:8, 8civ:8, 8cku:8, 8cmj:8, 7osm:eS31
18 7wtx:f 61 72 0.5541 0.6721 0.5694 8.94e-13 9bkd:k, 9bln:k
19 5ndg:e1 45 69 0.4324 0.7111 0.4638 7.18e-12
20 5jb3:Y 50 40 0.3108 0.4600 0.5750 4.45e-11 5jbh:Y, 6sw9:Y, 6swc:Y, 6swe:Y, 4v4n:BY, 4v6u:AY, 7zag:Y, 7zah:Y, 7zai:Y, 7zhg:Y
21 2k4x:A 55 40 0.2703 0.3636 0.5000 1.15e-09
22 8p5d:SFF 58 55 0.2432 0.3103 0.3273 1.63e-09 8p60:SFF, 8p60:RFF, 7qca:SFF
23 6tmf:Z 50 34 0.2568 0.3800 0.5588 8.85e-09
24 5xxu:f 45 45 0.3108 0.5111 0.5111 1.01e-08
25 7qvp:Rh 41 55 0.3649 0.6585 0.4909 7.56e-08 6y57:sh
26 8rxx:Sf 46 69 0.3378 0.5435 0.3623 0.010
27 8fvy:f 35 45 0.2703 0.5714 0.4444 0.012 8g4s:f
28 8hky:S27A 54 50 0.2568 0.3519 0.3800 0.081 8hkz:S27A, 8hl1:S27A, 8hl2:S27A, 8hl3:S27A, 8hl4:S27A, 8hl5:S27A, 8wkp:S27A, 8wq2:S27A, 8wq4:S27A
29 2jiz:G 192 25 0.1351 0.0521 0.4000 0.87 4asu:G, 2ck3:G, 2jdi:G, 2jiz:N, 4tt3:G, 4z1m:G
30 6agg:Z 420 24 0.1351 0.0238 0.4167 1.5 3amt:A, 3amu:A, 3au7:A, 4rvz:Z, 5xob:Z
31 6rm3:SFF 68 56 0.2297 0.2500 0.3036 2.0
32 5ey5:A 261 43 0.1622 0.0460 0.2791 2.2 5ey5:C
33 6rm3:LG0 195 38 0.1892 0.0718 0.3684 3.1
34 4v1t:B 753 36 0.1486 0.0146 0.3056 3.5 4v1t:A, 4v1u:A, 4v1u:B, 4v1v:A, 4v1v:B
35 6nc5:A 259 10 0.1216 0.0347 0.9000 3.6 6dqh:A, 6dr8:A
36 8b6h:DB 604 30 0.1622 0.0199 0.4000 4.6 8b6h:Db, 8bqs:DB, 8bqs:Db, 8gym:c2, 8gym:C2, 8gzu:27, 8gzu:82, 8gzu:c2, 8gzu:C2, 7w5z:C2, 7w5z:c2
37 5egj:A 167 46 0.1622 0.0719 0.2609 4.9 5egl:A, 5egl:B, 5egl:C
38 8kab:h 430 43 0.1351 0.0233 0.2326 5.0
39 8gqd:E 59 28 0.1351 0.1695 0.3571 5.8
40 3ad7:D 91 27 0.1486 0.1209 0.4074 9.5 3ad8:D, 3ad9:D, 3ada:D, 1vrq:D, 1x31:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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