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BioLiP
>protein
GKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITCRNGQWSEPPKCLHPCVISREIMENYNIALRWTKL
YSRTGESVEFVCKRGYRLSSRSHTLRTTCWDGKLEYPTCAKR

The query sequence (length=122) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4ont:D 126 125 1.0000 0.9683 0.9760 7.29e-88 4ont:F, 4ont:E, 4zh1:D, 4zh1:E, 4zh1:F
2 2uwn:A 187 100 0.1967 0.1283 0.2400 0.006 2v8e:A, 7zjm:B
3 2uwn:A 187 53 0.1475 0.0963 0.3396 4.0 2v8e:A, 7zjm:B
4 4e0s:B 898 114 0.2541 0.0345 0.2719 0.25 7nyc:B, 7nyd:B
5 8am6:AAA 547 44 0.1393 0.0311 0.3864 0.26 8am3:AAA, 8am3:BBB, 8am6:BaB, 8am8:BBB, 8am8:AAA
6 3t5o:A 871 114 0.2541 0.0356 0.2719 0.28
7 4a5w:B 871 114 0.2541 0.0356 0.2719 0.28
8 2xwb:F 714 114 0.2787 0.0476 0.2982 0.77 3hrz:D, 3hs0:D, 3hs0:I, 7jtn:A, 7jtn:C, 7jtq:A, 7jtq:C, 7noz:F, 2ok5:A, 1q0p:A, 6qsw:AAA, 6qsw:BBB, 6qsw:CCC, 6qsx:AAA, 6qsx:BBB, 6rav:AAA, 6rav:BBB, 1rrk:A, 1rs0:A, 1rtk:A, 6rur:L, 6rur:J, 6ruv:J, 6ruv:L, 6t8u:AAA, 6t8u:BBB, 6t8u:CCC, 6t8v:AAA, 6t8v:BBB, 6t8w:AAA, 6t8w:BBB, 2win:I, 2win:J, 2win:K, 2win:L, 2xwb:H
9 8em4:A 3818 97 0.2213 0.0071 0.2784 1.0 8em4:B
10 8em7:A 4378 97 0.2213 0.0062 0.2784 1.6 8em7:B, 8jut:A, 8jut:B, 8juu:B, 8juu:A, 8jx8:B, 8jx8:A, 8jx9:B, 8jxa:A, 8jxb:A, 8jxd:A, 8jxe:A, 8jxe:B, 8jxf:B, 8jxg:A, 8jxh:A, 8jxi:B
11 7aih:U 92 62 0.1639 0.2174 0.3226 2.0 7ane:U
12 7rzw:B 864 33 0.0902 0.0127 0.3333 2.2 7rzw:A
13 7mwz:D 301 68 0.1557 0.0631 0.2794 3.7
14 3mse:B 168 33 0.0902 0.0655 0.3333 3.7
15 2jrp:A 81 27 0.0902 0.1358 0.4074 5.4
16 8jxc:A 1337 97 0.2131 0.0194 0.2680 5.7 2i1p:A, 8jxb:B, 8jxh:B, 8jxi:A
17 1cg0:A 431 33 0.0984 0.0278 0.3636 6.9 1cg1:A, 1cg3:A, 1cg4:A, 1ch8:A, 1cib:A, 2gcq:A, 1gim:A, 1gin:A, 1hon:A, 1hoo:A, 1juy:A, 1kjx:A, 1kkb:A, 1kkf:A, 1ksz:A, 1nht:A, 1qf4:A, 1qf5:A, 1son:A, 1soo:A
18 5f7j:B 291 30 0.0902 0.0378 0.3667 8.6 5f76:A, 5f76:B, 5f76:C, 5f77:A, 5f77:B, 5f77:C, 5f7j:A, 5f7j:D, 5f7j:E, 5f7o:A, 5f7o:B, 5f7x:A, 5f7x:B, 5f7x:C, 5fak:A, 5fak:B, 5fak:D, 5fak:E, 4l5a:A, 4l5a:C, 4l5a:B, 4l5a:D, 4l5a:E, 4l5a:F, 4l5c:A, 4l5c:B, 4l5c:C, 4l5c:D, 4l5c:E, 4l5c:F, 4l6i:A, 4l6i:B, 4l6i:D, 4l6i:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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