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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHSSFISGFTPVKISLDFPSEYITEVSGYTGNVSGYVV
VRSLTFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFKGSIGYWMDYFSMYLSL

The query sequence (length=133) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4ak4:A 133 133 0.9398 0.9398 0.9398 1.27e-88 4ak4:C, 4ak4:E, 4ak4:G, 4ak4:I, 4ak4:K, 4ak4:M, 4ak4:O, 4akb:A, 4akb:C, 4akb:E, 4akb:G, 4akc:A, 4akc:C, 4akc:E, 4akc:G, 5bn6:E, 5bn6:F, 5bn6:H, 5bn6:G, 5j4t:A, 5j4t:C, 5j4t:E, 5j4t:G, 5j4x:A, 5j4x:C, 5j4x:E, 5j4x:G, 5j50:A, 5j50:C, 5j50:E, 5j50:G, 5j51:A, 5j51:C, 5j51:E, 5j51:G, 1jac:A, 1jac:C, 1jac:E, 1jac:G, 5jm1:A, 5jm1:C, 5jm1:E, 5jm1:G, 1ku8:A, 1ku8:C, 1ku8:E, 1ku8:G, 1kuj:A, 1kuj:C, 1kuj:E, 1kuj:G, 1m26:A, 1m26:C, 1m26:E, 1m26:G, 1pxd:A, 4r6n:A, 4r6n:C, 4r6n:E, 4r6n:G, 4r6o:A, 4r6o:C, 4r6o:E, 4r6o:G, 4r6p:A, 4r6p:C, 4r6p:E, 4r6p:G, 4r6q:A, 4r6q:C, 4r6q:E, 4r6q:G, 4r6r:A, 4r6r:C, 4r6r:E, 4r6r:G, 1toq:A, 1toq:C, 1toq:E, 1toq:G, 1tp8:A, 1tp8:C, 1tp8:E, 1tp8:G, 1ugw:A, 1ugw:C, 1ugw:E, 1ugw:G, 1ugx:A, 1ugy:A, 1ugy:C, 1ugy:E, 1ugy:G, 1uh0:A, 1uh0:C, 1uh0:E, 1uh0:G, 1uh1:A, 1uh1:C, 1uh1:E, 1uh1:G, 1ws4:A, 1ws4:C, 1ws4:E, 1ws4:G, 1ws5:A, 1ws5:C, 1ws5:E, 1ws5:G
2 1jot:A 133 133 0.7744 0.7744 0.7744 4.52e-74 3lly:A, 3llz:A, 3lm1:A, 3lm1:E, 3lm1:M, 3lm1:C, 3lm1:G, 3lm1:K, 3lm1:I, 3lm1:O
3 1xxr:B 154 137 0.6165 0.5325 0.5985 8.23e-50 1xxr:C, 1xxr:D
4 1j4u:A 149 135 0.5639 0.5034 0.5556 1.20e-41 1j4u:B, 1j4u:C, 1j4u:D, 1vbo:A, 1vbo:B, 1vbo:C, 1vbo:E, 1vbo:G, 1vbo:H, 1vbo:D, 1vbo:F, 1vbp:A, 1vbp:B
5 5m6o:A 150 138 0.5564 0.4933 0.5362 6.69e-41 5m6o:B, 5m6o:C, 5m6o:D, 5tqz:A, 5tqz:B, 5tqz:C, 5tqz:D
6 4pit:B 144 84 0.3008 0.2778 0.4762 2.17e-16 2bmz:A, 2bmz:B, 2bn0:A, 2bn0:B, 8hyf:A, 3mit:A, 3mit:B, 3miu:A, 3miu:B, 3miv:B, 4pik:B, 4pik:C, 4pik:D, 4pik:A, 4pit:A, 4pit:C, 4pit:D, 1x1v:A, 1x1v:B
7 1zgs:A 442 78 0.2556 0.0769 0.4359 8.29e-16 4mq0:A, 1zgs:B
8 1zgs:A 442 77 0.2481 0.0747 0.4286 5.02e-15 4mq0:A, 1zgs:B
9 1zgs:A 442 79 0.2331 0.0701 0.3924 4.36e-13 4mq0:A, 1zgs:B
10 6fly:A 144 72 0.2481 0.2292 0.4583 1.18e-15 6fly:B, 6flz:A, 6flz:B
11 4ddn:A 154 67 0.2632 0.2273 0.5224 1.56e-15 4ddn:B, 4ddn:C, 4ddn:D, 3r51:A, 3r52:A, 3r52:B, 3r52:C, 3r52:D
12 1c3m:A 145 63 0.2180 0.2000 0.4603 9.70e-10 1c3n:A
13 5xfi:A 152 92 0.2857 0.2500 0.4130 4.10e-09 5av7:A, 5av7:B, 5av7:C, 5av7:D, 5xfi:B
14 7v4s:A 143 102 0.2782 0.2587 0.3627 1.60e-07
15 6l4u:2 172 84 0.1729 0.1337 0.2738 0.66
16 3apa:A 138 113 0.2556 0.2464 0.3009 0.85 3vy6:A, 3vy7:A, 3vze:A, 3vzf:A, 3vzg:A
17 3nip:B 316 40 0.1128 0.0475 0.3750 1.8 3nip:C, 3nip:E, 3nip:D, 3nip:F, 3niq:A, 3niq:B
18 6ly5:H 170 86 0.1955 0.1529 0.3023 5.0
19 7nhk:n 114 31 0.0827 0.0965 0.3548 7.0 6o8w:m, 6o8x:m, 6o8y:m, 6o8z:m, 6o90:m, 7p7q:n, 7p7r:n, 7p7s:n, 7p7t:n, 7p7u:n, 6w6p:m, 6wua:m
20 7va8:A 456 18 0.0752 0.0219 0.5556 8.3 7va8:B, 7vaa:A, 7vaa:B
21 7nhn:n 114 31 0.0827 0.0965 0.3548 9.0 8uu4:m, 8uu5:m, 8uu6:m, 8uu7:m, 8uu8:m, 8uu9:m

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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