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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GIVCHTTATSPISAVTCPPGENLCYRKMWCDVFCSSRGKVVELGCAATCPSKKPYEEVTCCSTDKCNPHPKQRPG

The query sequence (length=75) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8vy8:B 75 75 1.0000 1.0000 1.0000 2.81e-51 1abt:A, 2btx:A, 1bxp:A, 1haa:A, 1haj:A, 5hbv:A, 1hc9:A, 1hc9:B, 1hoy:A, 1idg:A, 1idh:A, 1jbd:A, 1kc4:A, 1kl8:A, 1l4w:A, 1ljz:A, 2qc1:A, 1rgj:A, 6uwz:G, 8vy8:A, 8vy8:E, 8vy8:G
2 1lxg:A 71 67 0.5067 0.5352 0.5672 2.37e-19 1lxh:A, 7pc0:K, 6zfm:A, 6zfm:B, 6zfm:D, 6zfm:E
3 5ebx:A 62 60 0.3200 0.3871 0.4000 3.02e-09 6ebx:B
4 1v6p:A 62 67 0.3733 0.4516 0.4179 3.59e-08 1v6p:B
5 9avv:G 62 67 0.3600 0.4355 0.4030 1.13e-06 9avv:F, 9awk:F, 9awk:G
6 5mg9:A 65 59 0.3067 0.3538 0.3898 2.35e-06
7 2bhi:A 60 58 0.3067 0.3833 0.3966 2.51e-06 2bhi:B, 1h0j:A, 1h0j:B, 1h0j:C, 1xt3:A
8 7c28:A 65 51 0.2667 0.3077 0.3922 0.010 7c28:B
9 8phi:F 453 77 0.2667 0.0442 0.2597 2.6 9bjm:A, 5ea3:F, 5ea4:F, 5ea5:F, 5ea6:F, 6eag:F, 6eah:C, 6eak:F, 8kg5:A, 8kg5:C, 8kg5:B, 3kpe:A, 7kqd:F, 5kww:F, 6ntx:B, 6vkc:F, 6vkd:F, 6vke:F
10 8gri:F 482 24 0.1200 0.0187 0.3750 3.4 8gri:A, 8gri:B, 8gri:D, 8gri:C, 8gri:E, 8gri:G, 8gri:H, 7xqa:A, 7xqa:B, 7xqa:C, 7xqa:D, 7xqa:E, 7xqa:F, 7xqa:G, 7xqa:H, 7xx0:A, 7xx0:B, 7xx0:C, 7xx0:D, 7xx0:E, 7xx0:G, 7xx0:F, 7xx0:H, 7xxc:A, 7xxc:C, 7xxc:B, 7xxc:D, 7xxc:E, 7xxc:G, 7xxc:F, 7xxc:H, 7xxd:A, 7xxd:B, 7xxd:C, 7xxd:D, 7xxd:E, 7xxd:F, 7xxd:G, 7xxd:H, 7xxm:A, 7xxm:C, 7xxm:B, 7xxm:D, 7xxm:E, 7xxm:G, 7xxm:F, 7xxm:H, 7xxp:A, 7xxp:B, 7xxp:C, 7xxp:D, 7xxp:E, 7xxp:F, 7xxp:G, 7xxp:H, 7xxr:A, 7xxr:C, 7xxr:B, 7xxr:D, 7xxr:E, 7xxr:G, 7xxr:F, 7xxr:H, 7xye:A, 7xye:B, 7xye:C, 7xye:D, 7xye:E, 7xye:F, 7xye:G, 7xye:H, 7xyl:A, 7xyl:C, 7xyl:B, 7xyl:D, 7xyl:E, 7xyl:G, 7xyl:F, 7xyl:H, 7y0x:A, 7y0x:C, 7y0x:B, 7y0x:D, 7y0x:E, 7y0x:G, 7y0x:F, 7y0x:H
11 8we8:B 60 60 0.2800 0.3500 0.3500 5.9
12 1zfn:A 244 17 0.1200 0.0369 0.5294 7.9 1zfn:B, 1zfn:C, 1zfn:D, 1zkm:A, 1zkm:B, 1zkm:C, 1zkm:D, 1zud:1, 1zud:3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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