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BioLiP
>protein
GIEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQNLARTISEAGQ

The query sequence (length=72) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3fav:B 72 72 1.0000 1.0000 1.0000 1.01e-45
2 5xyi:Q 133 21 0.1389 0.0752 0.4762 3.7
3 8i90:A 440 31 0.1806 0.0295 0.4194 4.0 8i90:B, 8i94:A, 8i94:B
4 7a4p:3 241 25 0.1667 0.0498 0.4800 5.9 6zzx:3, 6zzy:3
5 5l8r:3 221 22 0.1528 0.0498 0.5000 6.1 7dkz:3, 8j6z:3, 8j7a:3, 8j7b:3, 3lw5:3, 7wfd:A3, 7wfe:B3, 7wg5:A3, 7wg5:B3, 2wsc:3, 2wse:3, 2wsf:3, 4xk8:3, 4xk8:8, 4y28:3, 6yac:3, 6yez:3, 6zoo:3, 6zxs:3
6 1o7l:B 256 17 0.1389 0.0391 0.5882 9.7 1h9r:A, 1h9r:B, 1h9s:A, 1h9s:B, 1o7l:A, 1o7l:C, 1o7l:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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