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BioLiP
>protein
GIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRCQHAAEIITDLLRSVQA

The query sequence (length=72) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6y2c:B 84 72 1.0000 0.8571 1.0000 9.77e-48
2 1j4w:A 145 70 0.9583 0.4759 0.9857 2.30e-44 6y2c:A
3 1j4w:A 145 63 0.2500 0.1241 0.2857 0.001 6y2c:A
4 4b8t:A 106 72 0.7639 0.5189 0.7639 7.63e-37
5 3vke:A 76 57 0.3194 0.3026 0.4035 3.11e-08 2axy:B, 2axy:D, 2pqu:C, 2pqu:B, 2py9:B, 2py9:C, 3vke:B, 3vke:C, 3vke:D, 1ztg:A, 1ztg:D, 1ztg:B, 1ztg:C
6 2axy:A 72 57 0.3056 0.3056 0.3860 4.00e-07 2axy:C, 2pqu:A, 2py9:A
7 1zzi:A 82 66 0.3056 0.2683 0.3333 7.64e-06 7cre:A, 1j5k:A, 1zzi:B, 1zzj:A, 1zzj:B
8 1ec6:A 87 68 0.2778 0.2299 0.2941 8.81e-04 1ec6:B
9 7yey:A 162 73 0.3194 0.1420 0.3151 0.001 7vkl:A
10 8coo:A 191 56 0.3056 0.1152 0.3929 0.002 2n8l:A, 2n8m:A
11 8coo:A 191 69 0.3056 0.1152 0.3188 0.95 2n8l:A, 2n8m:A
12 2anr:A 155 64 0.2361 0.1097 0.2656 0.002 2ann:A
13 2p2r:A 73 68 0.3056 0.3014 0.3235 0.015
14 5wwx:A 84 62 0.2778 0.2381 0.3226 0.046
15 7aqq:f 101 34 0.1806 0.1287 0.3824 0.32 7a23:c, 7a24:c, 7ar7:f, 7ar8:f, 7arb:f, 8bef:f, 8bpx:f, 8bq5:f, 8bq6:f
16 4i94:A 297 47 0.2361 0.0572 0.3617 0.41 4i94:B
17 5a22:A 2002 33 0.1806 0.0065 0.3939 2.3
18 6u1x:A 2059 33 0.1806 0.0063 0.3939 2.3
19 3qo8:A 441 33 0.1667 0.0272 0.3636 2.9 3qo7:A
20 8cvo:G 214 55 0.2500 0.0841 0.3273 3.5 8crx:G
21 6yxx:Ae 127 47 0.1806 0.1024 0.2766 4.3 7aoi:Ae, 6hiv:Ae, 6hix:Ae, 6yxy:Ae
22 4zv1:A 226 43 0.1806 0.0575 0.3023 4.9 4zv2:A
23 4hcx:A 402 59 0.2500 0.0448 0.3051 5.7 4hcx:B
24 4r3u:A 557 32 0.1806 0.0233 0.4062 6.0 4r3u:B
25 4dxg:A 194 47 0.1667 0.0619 0.2553 7.4 4rco:A, 4rco:B
26 8rdv:CT 205 42 0.2083 0.0732 0.3571 9.3 8rd8:CT, 8rdw:CT

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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