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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GHQLRLGVAGLGRAFTLMLPTLQQDPRIKLVAACDPRGSARAQFASDFRAPVYPDIEGLASNPDVEAIYIASPHQFHAQQ
ARIAARHGKHVLVEKPMALSLGDCDEMIQHCRDAGVHLIVGHCHSFDTPYLSAREIVQSGELGPVRMVHALNYTDFLYRP
RRPEEEGGGVVFSQAAHQVDIVRLLVGTRVRRVRAITGDWDPMRPTQGAYSALLWFEGGAFASISYNGYGHFDSDEWCDW
IGEMGGDKSPIWHQHFGPIVVSCERGDIRPLPDSVCVYADLAKERRSLQRPVVPRFEVIDELYHAVVNEIKPLHDGVWAR
ATLEVCLALLDSAGSGKDVELP

The query sequence (length=342) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7x2y:A 342 343 0.9971 0.9971 0.9942 0.0 7x1x:A, 7x1x:B, 7x2y:B
2 5a03:C 336 239 0.1988 0.2024 0.2845 2.28e-20 5a02:A, 5a02:B, 5a02:C, 5a02:D, 5a02:E, 5a02:F, 5a03:A, 5a03:B, 5a03:D, 5a03:E, 5a03:F, 5a04:A, 5a04:B, 5a04:C, 5a04:D, 5a04:E, 5a04:F, 5a05:A, 5a05:C, 5a05:D, 5a05:E, 5a05:B, 5a05:F, 5a06:A, 5a06:B, 5a06:C, 5a06:D, 5a06:E, 5a06:F
3 6z3c:AAA 379 196 0.1637 0.1478 0.2857 3.06e-20 6z3b:A, 6z3b:B, 6z3c:BBB
4 6o15:A 355 232 0.1725 0.1662 0.2543 2.85e-19 6o15:B
5 4koa:A 333 336 0.2544 0.2613 0.2589 7.78e-19
6 2glx:A 332 164 0.1520 0.1566 0.3171 1.61e-18 2glx:B, 2glx:C, 2glx:D, 2glx:E, 2glx:F
7 1h6d:A 383 205 0.1871 0.1671 0.3122 1.05e-17 1evj:A, 1evj:B, 1evj:C, 1evj:D, 1h6a:A, 1h6a:B, 1h6b:A, 1h6b:B, 1h6c:A, 1h6c:B, 1h6d:C, 1h6d:B, 1h6d:D, 1h6d:E, 1h6d:G, 1h6d:F, 1h6d:H, 1h6d:I, 1h6d:K, 1h6d:J, 1h6d:L, 1ofg:A, 1ofg:D, 1ofg:B, 1ofg:C, 1ofg:E, 1ofg:F, 1ryd:A, 1ryd:B, 1rye:A, 1rye:D, 1rye:B, 1rye:C
8 3ec7:A 336 264 0.2076 0.2113 0.2689 1.08e-17 3ec7:B, 3ec7:C, 3ec7:D, 3ec7:E, 3ec7:F, 3ec7:G, 3ec7:H
9 3q2k:K 322 305 0.2251 0.2391 0.2525 6.44e-17 3q2k:E, 3q2k:L, 3q2k:P
10 3q2k:C 347 315 0.2339 0.2305 0.2540 7.09e-17 3q2k:A, 3q2k:B, 3q2k:D, 3q2k:F, 3q2k:G, 3q2k:H, 3q2k:I, 3q2k:J, 3q2k:M, 3q2k:N, 3q2k:O
11 4n54:A 340 209 0.1520 0.1529 0.2488 1.20e-15 4n54:B, 4n54:C, 4n54:D
12 3m2t:A 342 241 0.1871 0.1871 0.2656 4.73e-15 3m2t:B
13 8tdi:G 386 205 0.1754 0.1554 0.2927 2.17e-13 8tdi:L, 8tdi:J, 8tdi:A, 8tdi:C, 8tdi:D, 8tdi:E, 8tdi:F, 8tdi:H, 8tdi:I, 8tdi:B, 8tdi:K
14 2o4u:X 331 188 0.1520 0.1571 0.2766 1.23e-12 2poq:X
15 9azo:A 315 254 0.1754 0.1905 0.2362 2.74e-12 9azo:B, 9azo:C, 9azo:D, 9azo:E, 9azo:F
16 7xre:C 363 176 0.1345 0.1267 0.2614 5.57e-12 7xr9:A, 7xr9:B, 7xr9:C, 7xr9:D, 7xr9:E, 7xr9:F, 7xre:A, 7xre:B, 7xre:D, 7xre:E, 7xre:F
17 6a3j:C 378 189 0.1462 0.1323 0.2646 7.10e-12 6a3g:A, 6a3g:B, 6a3g:C, 6a3g:D, 6a3i:A, 6a3i:B, 6a3i:C, 6a3i:D, 6a3j:A, 6a3j:B, 6a3j:D
18 3cea:A 342 197 0.1433 0.1433 0.2487 1.86e-11 3cea:B, 3cea:C, 3cea:D
19 3q2i:A 345 361 0.2427 0.2406 0.2299 2.03e-11
20 5b3u:B 317 298 0.2135 0.2303 0.2450 6.63e-11 5b3v:B, 5b3v:A, 5b3v:C, 5b3v:D
21 1zh8:A 325 245 0.1725 0.1815 0.2408 1.33e-10 1zh8:B
22 6jw7:A 342 212 0.1754 0.1754 0.2830 2.89e-10 6jw6:A, 6jw6:B, 6jw7:B, 6jw8:A, 6jw8:B
23 3e18:A 348 181 0.1345 0.1322 0.2541 3.62e-10 3e18:B
24 4l8v:A 337 261 0.1579 0.1602 0.2069 1.08e-08 4l8v:B, 4l8v:C, 4l8v:D, 3nt2:A, 3nt2:B, 3nt4:A, 3nt4:B, 3nt5:A, 3nt5:B, 3ntq:A, 3ntq:B, 3ntr:A, 3ntr:B
25 3rc1:A 325 201 0.1345 0.1415 0.2289 2.25e-08 3rbv:A, 3rc2:A, 3rc7:A, 3rc9:A, 3rcb:A
26 6nor:A 349 183 0.1462 0.1433 0.2732 4.34e-08 6nor:B, 6nor:C, 6nor:D, 6nor:E, 6nor:F
27 5uhw:A 342 179 0.1345 0.1345 0.2570 6.66e-08 5uhw:B, 5uhz:A, 5uhz:B, 5ui9:A, 5ui9:B, 5uia:A, 5uia:B, 5uib:A, 5uib:B
28 7cgq:A 306 142 0.1316 0.1471 0.3169 2.08e-07 7cgq:B, 7cgq:C, 7cgq:D, 7cgr:A, 7cgr:B, 7cgr:C, 7cgr:D, 6jnk:A, 6jnk:B, 6jnk:C, 6jnk:D
29 6ktk:C 368 138 0.1111 0.1033 0.2754 2.25e-07 6ktk:A, 6ktk:B, 6ktk:D, 6ktl:A, 6ktl:B, 6ktl:C, 6ktl:D, 5ya8:A, 5ya8:B, 5ya8:C, 5ya8:D, 5yap:A, 5yap:B, 5yap:C, 5yap:D, 5yaq:A, 5yaq:B, 5yaq:C, 5yaq:D
30 8qc8:D 339 236 0.1637 0.1652 0.2373 6.32e-07
31 8qc6:A 366 203 0.1404 0.1311 0.2365 1.69e-06 8qc3:A, 8qc3:B, 8qc5:A, 8qc5:B, 8qc6:B
32 8qc8:B 367 203 0.1433 0.1335 0.2414 2.26e-06 8qc2:A, 8qc2:B, 8qc2:C, 8qc2:D, 8qc8:C, 8qc8:A
33 7d5m:A 389 102 0.0906 0.0797 0.3039 3.46e-06 7d5n:A, 7d5n:B
34 4min:A 339 146 0.1023 0.1032 0.2397 5.02e-06 4min:B, 4min:C, 4min:D, 4mio:A, 4mio:B, 4mio:C, 4mio:D, 4miy:A, 4miy:B, 4miy:C, 4miy:D, 4mjl:A, 4mjl:B, 4mjl:C, 4mjl:D
35 4nhe:B 326 93 0.0877 0.0920 0.3226 5.44e-06 4nhe:A, 4nhe:C
36 3dty:A 374 87 0.0819 0.0749 0.3218 1.24e-05 3dty:E
37 7bvj:A 313 117 0.0936 0.1022 0.2735 1.69e-04 7bvj:B, 7bvj:C, 7bvj:D, 7bvk:A, 7bvk:B
38 2ixa:A 426 189 0.1053 0.0845 0.1905 2.51e-04 2ixb:A
39 2h63:D 285 61 0.0673 0.0807 0.3770 8.18e-04 2h63:A, 2h63:B, 2h63:C
40 8tdf:A 452 104 0.0877 0.0664 0.2885 0.002 8tdf:B, 8tdf:C, 8tdf:D, 8tdh:B, 8tdh:C, 8tdh:D, 8tdh:A
41 3e1k:A 395 224 0.1287 0.1114 0.1964 0.004 3e1k:C, 3e1k:E, 3e1k:G, 3e1k:I, 3e1k:K, 3e1k:M, 3e1k:O
42 1lc3:A 292 52 0.0526 0.0616 0.3462 0.048 1lc0:A
43 3o9z:A 310 35 0.0468 0.0516 0.4571 0.10 3o9z:B, 3o9z:C, 3o9z:D, 3oa0:A, 3oa0:B, 3oa0:C, 3oa0:D
44 6t2b:B 439 153 0.1082 0.0843 0.2418 0.23 6t2b:A, 6t2b:C, 6t2b:D
45 6bzo:F 326 52 0.0409 0.0429 0.2692 0.38 6c04:F, 6cce:F, 6ccv:F, 6dcf:F, 6edt:F, 6ee8:F, 6eec:F, 6fbv:F, 8hih:F, 7kif:F, 7kim:F, 7kin:F, 6m7j:F, 6ono:B, 6ono:D, 6onu:B, 6onu:D, 6onu:F, 6onu:H, 7p5x:AF, 5tw1:F, 7u22:F, 5uh5:F, 5uh6:F, 5uh8:F, 5uh9:F, 5uha:F, 5uhb:F, 5uhc:F, 5uhd:F, 5uhe:F, 5uhf:F, 5uhg:F, 5vi5:F, 5vi8:F, 6vvs:F, 6vvt:F, 6vvv:F, 6vvx:F, 6vvy:F, 6vvz:F, 6vw0:F
46 1e5q:A 449 116 0.0936 0.0713 0.2759 0.41 1e5q:B, 1e5q:C, 1e5q:D, 1e5q:E, 1e5q:F, 1e5q:G, 1e5q:H
47 3f1y:A 318 101 0.0906 0.0975 0.3069 0.83 3f1y:C, 3kia:A, 3kia:C, 3o3p:A, 3o3p:B
48 6mbn:A 241 67 0.0585 0.0830 0.2985 2.7 6b89:A, 6b89:B, 6b8b:A, 6mbn:B, 6mgf:A, 6mhz:A, 6mhz:B, 6mi8:A, 6mi8:B, 6mit:B, 6mit:E, 4p31:A, 4p31:B, 4p32:A, 4p32:B, 4p33:A, 4p33:B, 4qc2:A, 4qc2:B, 6s8g:A, 6s8g:B, 6s8n:B
49 6skf:BO 148 59 0.0497 0.1149 0.2881 2.7 6skg:BO, 6th6:BO
50 8dku:A 395 77 0.0497 0.0430 0.2208 3.5 8dky:A, 8dky:B, 8dn8:A, 8dn8:C, 8dnc:A, 8dne:A, 8dne:C, 8dou:A, 8dou:C, 7k2t:A, 7k2t:C, 6m96:A
51 4gmg:A 358 84 0.0731 0.0698 0.2976 4.0 4gmg:B, 4gmg:C, 4gmg:D, 5kvq:A, 5kvq:B, 5kvs:A, 5kvs:B
52 8k60:F 315 46 0.0351 0.0381 0.2609 5.7 8dy7:F, 8dy9:F, 8hvr:F, 8jke:F, 7vpd:F, 7vpz:F, 7x74:F, 7x75:F, 7x76:F
53 7rdq:F 349 45 0.0380 0.0372 0.2889 6.6 2a68:F, 2a68:P, 2a69:F, 2a69:P, 6cuu:F, 5d4c:F, 5d4c:P, 5d4d:F, 5d4d:P, 5d4e:F, 5d4e:P, 5e17:F, 5e18:F, 7eh0:F, 7eh1:F, 7eh2:F, 7eh2:P, 4g7h:F, 4g7h:P, 4g7o:F, 4g7o:P, 4g7z:F, 4g7z:P, 5i2d:F, 5i2d:Q, 1iw7:F, 1iw7:P, 4ki2:A, 4ki2:B, 6kqd:F, 6kqd:P, 6kqe:F, 6kqf:F, 6kqg:F, 6kqh:F, 6kql:F, 6kqm:F, 6kqn:F, 1ku7:A, 6l74:F, 6lts:F, 7mlb:F, 7mli:F, 7mlj:F, 3n97:A, 4oin:F, 4oio:F, 4oip:F, 4oiq:F, 4oir:F, 6ovr:F, 6ovy:F, 6ow3:F, 6oy5:F, 6oy6:F, 6oy7:F, 6p70:F, 6p71:F, 4q4z:F, 4q5s:F, 1rio:H, 1smy:F, 5tjg:F, 3ugo:A, 3ugp:A, 5vo8:F, 5voi:F, 8w8n:F, 8w8o:F, 8w8p:F, 6wox:F, 6woy:F, 5x21:F, 5x22:F, 5x22:P, 4xln:F, 4xln:L, 4xlp:F, 4xlp:L, 4xlq:F, 4xlq:L, 4xlr:F, 4xlr:L, 4xls:F, 4xls:L
54 3wy0:B 377 155 0.1082 0.0981 0.2387 8.2 3wxy:A, 3wxy:B, 3wy0:A
55 4umk:D 176 51 0.0468 0.0909 0.3137 9.9 4umk:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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