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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GHMSNNFELKLQMSKVKGVSLHKFHLVNDLRGNLSVGEFEKDIPFTPKRYFTVFGVPNKEVRGEHAHKECKQFLICVSGN
CSVLVDDGENREEYVLDSIDKGIYLPPMTWGVQYKYSKDAVLLVFASHYYDSDDYIRDYSTFKQMR

The query sequence (length=146) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4mzu:F 294 140 0.9589 0.4762 1.0000 6.99e-103 4mzu:A, 4mzu:C, 4mzu:E, 4mzu:B, 4mzu:D, 4mzu:G, 4mzu:I, 4mzu:K, 4mzu:H, 4mzu:J, 4mzu:L, 4zu4:A, 4zu4:B, 4zu4:C
2 2pae:A 136 121 0.3562 0.3824 0.4298 1.52e-31 2pa7:A, 2pa7:B, 2pae:B, 2pak:A, 2pak:B, 2pam:A, 2pam:B
3 5tpv:B 138 127 0.2877 0.3043 0.3307 1.17e-26 5tpv:A, 5tpv:C
4 5tpu:A 133 127 0.3219 0.3534 0.3701 1.59e-25 5tpu:B, 5tpu:C, 5tpu:D
5 7n67:B 133 122 0.3151 0.3459 0.3770 1.67e-24 7n67:A
6 4o9g:A 138 125 0.2945 0.3116 0.3440 2.81e-20 4o9e:A, 4o9e:B, 4o9g:B, 4zu5:B, 4zu7:A, 4zu7:B, 4zu7:C, 4zu7:D, 4zu7:E, 4zu7:F, 4zu7:G, 4zu7:H
7 2d38:A 156 66 0.1370 0.1282 0.3030 0.96 2d36:A, 2d37:A
8 7wh0:A 529 92 0.1918 0.0529 0.3043 1.8 7wh0:B
9 4gdj:B 321 21 0.0822 0.0374 0.5714 3.0 4gdj:C, 4gdj:D
10 7ly7:A 908 18 0.0616 0.0099 0.5000 3.2
11 2iq7:E 339 46 0.0822 0.0354 0.2609 4.4
12 7aat:A 401 40 0.0890 0.0324 0.3250 4.9 7aat:B, 8aat:A, 8aat:B, 9aat:A, 9aat:B, 1aka:A, 1aka:B, 1akb:A, 1akc:A, 1ama:A, 1ivr:A, 1map:A, 1maq:A, 1oxo:A, 1oxo:B, 1oxp:A, 1tar:A, 1tar:B, 1tas:A, 1tas:B, 1tat:A, 1tat:B
13 4fvk:A 367 29 0.0822 0.0327 0.4138 7.1 4fvk:B, 4gdi:A, 4gdi:B, 4gdi:C, 4gdi:D, 4gdi:E, 4gdi:F, 4gdj:A, 4gez:A, 4gez:B, 4gez:C, 4gez:D, 4gez:E, 4gez:F, 4gez:G, 4gez:H, 4gez:I, 4gez:J, 4gez:K, 4gez:L

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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