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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GHKIKGTVVLMPKNELEVNLNAFLGRSVSLQLISATKADAHGKGKVGKDTFLEGINTSLPTLGAGESAFNIHFEWDGSMG
IPGAFYIKNYMQVEFFLKSLTLEAISNQGTIRFVCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVEYREEELKSLRGN
GTGERKEYDRIYDYDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLKSK
DALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLPRDVISTIIPLPVIKELYRTDGQHILKFPQPHV
VQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKSNLDPAIYGDQSSKITADSLDLDGYTMDEALGSRRLFMLDYHDI
FMPYVRQINQLNSAKTYATRTILFLREDGTLKPVAIELSLPHAVSQVVLPAKEGVESTIWLLAKAYVIVNDSCYHQLMSH
WLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALARQSLINANGIIETTFLPSKYSVEMSSAVYKNWVFTDQ
ALPADLIKRGVAIKDPSTPHGVRLLIEDYPYAADGLEIWAAIKTWVQEYVPLYYARDDDVKNDSELQHWWKEAVEKGHGD
LKDKPWWPKLQTLEDLVEVCLIIIWIASALHAAVNFGQYPYGGLIMNRPTASRRLLPEKGTPEYEEMINNHEKAYLRTIT
SKLPTLISLSAIEILSTHASDEVYLGQRDNPHWTSDSKALQAFQKFGNKLKEIEEKLVRRNNDPSLQGNRLGPVQLPYTL
LYPSSEEGLTFRGIPNSISI

The query sequence (length=820) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1yge:A 839 835 0.9976 0.9750 0.9796 0.0 3bnb:A, 3bnc:A, 3bnd:A, 3bne:A, 5eeo:A, 1f8n:A, 1fgm:A, 1fgo:A, 1fgq:A, 1fgr:A, 1fgt:A, 3pzw:A, 2sbl:B, 2sbl:A, 7soi:A, 7soi:B, 7soj:A, 7soj:B, 5t5v:A, 5t5v:B, 5tqn:A, 5tqn:B, 5tqo:A, 5tqo:B, 5tqp:A, 5tqp:B, 5tr0:A, 5tr0:B, 4wfo:A, 4wha:A, 1y4k:A
2 1no3:A 851 851 0.7305 0.7039 0.7039 0.0 1hu9:A, 1ik3:A, 1jnq:A, 1lnh:A, 1n8q:A, 1rov:A, 1rrh:A, 1rrl:A, 1rrl:B
3 2iuk:A 835 839 0.7024 0.6898 0.6865 0.0 2iuk:B
4 2iuj:A 833 838 0.6695 0.6591 0.6551 0.0
5 8i6y:A 844 848 0.5878 0.5711 0.5684 0.0 8i6y:B
6 5med:A 569 524 0.1890 0.2724 0.2958 9.47e-51 5med:B, 5mee:A, 5mee:B, 5mef:A, 5mef:B, 5meg:A, 5meg:B
7 3dy5:A 1002 511 0.1805 0.1477 0.2896 4.54e-48 3dy5:C, 1u5u:A, 1u5u:B
8 3fg3:A 687 514 0.1805 0.2154 0.2879 1.02e-47 3fg1:A, 3fg1:B, 3fg1:C, 3fg1:D, 3fg3:B, 3fg3:C, 3fg3:D, 3fg4:A, 3fg4:B, 3fg4:C, 3fg4:D, 2fnq:A, 2fnq:B, 4qwt:A, 4qwt:B, 4qwt:C, 4qwt:D
9 3vf1:A 680 517 0.1817 0.2191 0.2882 1.81e-44 3vf1:B
10 6ncf:B 676 496 0.1671 0.2027 0.2762 5.20e-43 6ncf:A, 6ncf:C, 6ncf:D, 3o8y:A, 3o8y:B, 7ttk:A, 7ttk:B, 7ttl:A, 7ttl:D, 3v92:B, 3v92:A, 3v98:A, 3v98:B
11 7ttl:C 617 501 0.1683 0.2237 0.2754 1.31e-41 6n2w:A, 6n2w:B
12 4g33:A 661 494 0.1793 0.2224 0.2976 2.70e-41 4g32:A, 5ir4:A, 5ir5:A, 5lc8:A, 4rpe:A
13 3v99:B 639 495 0.1646 0.2113 0.2727 8.56e-41
14 7ttj:A 643 495 0.1646 0.2100 0.2727 5.82e-40 7ttl:B, 3v99:A
15 4nre:A 675 527 0.1829 0.2222 0.2846 2.06e-39 7laf:A, 7laf:B
16 3rde:A 552 500 0.1634 0.2428 0.2680 5.74e-39 3rde:B, 3rde:C, 3rde:D
17 7ttj:B 590 495 0.1659 0.2305 0.2747 5.05e-38
18 8ghc:A 662 506 0.1646 0.2039 0.2668 9.67e-37 8ghb:A, 8ghc:B, 8ghd:A, 8ghd:B, 8ghd:C, 8ghd:D, 8ghd:E, 8ghd:F, 8ghe:B, 8ghe:C, 8ghe:D, 8ghe:A
19 2p0m:A 662 493 0.1561 0.1934 0.2596 1.29e-35 1lox:A, 2p0m:B
20 3d3l:A 451 488 0.1500 0.2727 0.2520 4.99e-32 3d3l:B
21 6ns2:A 634 404 0.1341 0.1735 0.2723 1.39e-28 6ns2:C
22 6ns4:A 685 404 0.1341 0.1606 0.2723 1.72e-28 6ns3:A, 6ns4:B, 6ns5:A, 6ns5:B, 6ns6:A, 6ns6:B
23 5fx8:A 563 376 0.1268 0.1847 0.2766 6.31e-15 5fx8:B
24 5fno:A 568 391 0.1232 0.1778 0.2583 2.39e-14 5fno:B
25 5ek8:A 668 233 0.0671 0.0823 0.2361 6.68e-04
26 8sm9:F 344 102 0.0293 0.0698 0.2353 0.41 8sm9:B, 8sm9:D, 8sm9:H
27 4v7j:Ay 94 66 0.0207 0.1809 0.2576 2.5 4v7j:By, 4v7k:Ay, 4v7k:By
28 7xql:A 444 185 0.0549 0.1014 0.2432 3.2
29 4xjn:A 395 167 0.0500 0.1038 0.2455 3.5 5wkn:A, 5wkn:B, 4xjn:B, 4xjn:C, 4xjn:D, 4xjn:E, 4xjn:F, 4xjn:G, 4xjn:H, 4xjn:I, 4xjn:J, 4xjn:K, 4xjn:L, 4xjn:M
30 2de6:B 390 128 0.0366 0.0769 0.2344 5.8 7bug:A, 7bug:B, 7bug:C, 7bui:A, 7bui:B, 7bui:C, 2de5:A, 2de5:B, 2de5:C, 2de6:A, 2de6:C, 2de7:A, 2de7:B, 2de7:C, 6ll0:A, 6ll0:B, 6ll0:C, 6ll1:A, 6ll1:B, 6ll1:C, 6ll4:A, 6ll4:B, 6ll4:C, 6llf:A, 6llf:B, 6llf:C, 6llh:A, 6llh:B, 6llh:C, 6llk:A, 6llm:A, 4nb8:A, 4nb8:B, 4nb8:C, 4nb9:A, 4nb9:B, 4nb9:C, 4nba:A, 4nba:B, 4nba:C, 4nbb:A, 4nbb:B, 4nbb:C, 4nbc:A, 4nbc:B, 4nbc:C, 4nbd:A, 4nbd:B, 4nbd:C, 4nbe:A, 4nbe:B, 4nbe:C, 4nbf:A, 4nbf:B, 4nbf:C, 4nbg:A, 4nbg:B, 4nbg:C, 4nbh:A, 4nbh:B, 4nbh:C, 3vmg:A, 3vmg:B, 3vmg:C, 3vmh:A, 3vmh:B, 3vmh:C, 3vmi:A, 3vmi:B, 3vmi:C, 1ww9:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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