Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GGSLKKNTVDDISESLRQGGGKLNFDELRQDLKGKGHTDAEIEAIFTKYDQDGDQELTEHEHQQMRDDLEKEREDLDLD

The query sequence (length=79) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2y4q:A 79 79 1.0000 1.0000 1.0000 3.50e-51
2 2doq:B 149 71 0.2785 0.1477 0.3099 0.032 2doq:A, 2doq:C, 4mbe:D, 4mbe:A
3 4c0k:A 404 22 0.1266 0.0248 0.4545 0.13 4c0l:A
4 1s6i:A 182 59 0.2278 0.0989 0.3051 0.69
5 8fzi:v 525 37 0.1899 0.0286 0.4054 1.1 8fzd:v, 8fzf:v, 8fzg:v, 8fzj:v, 6gwt:w, 6gxm:w, 6gxn:w, 6gxo:w, 6gxp:w, 2h5e:A, 2h5e:B, 6lkq:v, 7m5d:7, 4v85:AW, 4v89:AW, 4v8o:AY
6 6fie:B 255 49 0.2152 0.0667 0.3469 1.8
7 4mvf:A 408 52 0.2025 0.0392 0.3077 2.2 3pm8:A, 3pm8:B
8 7ojk:L 1843 49 0.1899 0.0081 0.3061 2.7
9 2lcp:A 190 51 0.1899 0.0789 0.2941 4.9 5aeq:A, 5aeq:B, 5aer:A, 5afp:B, 5afp:A, 8ahy:B, 8alh:B, 8alm:B, 1g8i:A, 1g8i:B, 4guk:A, 4guk:C, 4guk:B, 4guk:D, 4ov2:A, 4ov2:B, 4ov2:C, 4ov2:D, 6qi4:B, 6qi4:C, 4yru:A, 4yru:B, 4yru:C, 4yru:D
10 3qzc:B 112 19 0.1266 0.0893 0.5263 5.4 3qzc:A
11 1omr:A 201 43 0.1646 0.0647 0.3023 7.1 2het:A, 2het:B, 2het:C, 2het:D, 2i94:A, 1jsa:A, 1la3:A, 4m2o:A, 4m2p:A, 4m2q:A, 4mlw:A, 1omv:A, 1rec:A, 4yi8:A, 4yi9:A
12 1d3a:A 303 56 0.2278 0.0594 0.3214 9.8 1d3a:B, 1hlp:A, 1hlp:B, 2hlp:A, 1o6z:A, 1o6z:B, 1o6z:C, 1o6z:D, 2x0r:A, 2x0r:B
13 8tp1:A 419 32 0.1646 0.0310 0.4062 9.8 8t14:A, 8t14:G, 8t14:B, 8t14:C, 8t14:D, 8t14:E, 8t14:F, 8t5u:A, 8t5u:B, 8t5u:C, 8t5u:D, 8t5u:E, 8t5u:F, 8t5u:G, 8t7u:A, 8t7u:G, 8t7u:B, 8t7u:C, 8t7u:D, 8t7u:E, 8t7u:F, 8ti0:A, 8ti0:B, 8ti0:C, 8ti0:D, 8ti0:E, 8ti0:F, 8ti0:G, 8tp1:B, 8tp1:C, 8tp1:D, 8tp1:E, 8tp1:F, 8tp1:G, 8tpl:A, 8tpl:B, 8tpl:C, 8tpl:D, 8tpl:E, 8tpl:F, 8tpl:G, 6u1y:A, 6u1y:G, 6u1y:B, 6u1y:E, 6u1y:C, 6u1y:D, 6u1y:F, 6uko:A, 6uko:B, 6uko:C, 6uko:D, 6uko:E, 6uko:F, 6uko:G, 6uks:A, 6uks:G, 6uks:B, 6uks:C, 6uks:D, 6uks:E, 6uks:F

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218