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BioLiP
>protein
GGQWRLQQGLAANPSGYGPLTELPDWSYADGRPAPPMKGQLRRKAERETFARRVVLLSQEMDAGLQAWQLRQQKLQEEQR
KQENA

The query sequence (length=85) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6gaw:Bo 97 86 0.9176 0.8041 0.9070 2.00e-50 7a5f:j3, 7a5g:j3, 7a5h:j, 7a5i:j3, 7a5j:j, 7a5k:j3, 5aj4:Bo, 8any:j, 6gb2:Bo, 6i9r:j, 3j7y:j, 3j9m:j, 8k2a:Lz, 8k2b:Lz, 7l08:j, 7l20:j, 7nqh:Bo, 7nql:Bo, 7nsh:Bo, 7nsi:Bo, 7nsj:Bo, 6nu2:j, 6nu3:j, 7o9k:j, 7o9m:j, 7odr:j, 7ods:j, 7odt:j, 7of0:j, 7of2:j, 7of3:j, 7of4:j, 7of5:j, 7of6:j, 7of7:j, 7og4:j, 7oi6:j, 7oi7:j, 7oi8:j, 7oi9:j, 7oia:j, 7oib:j, 7oic:j, 7oid:j, 7oie:j, 8oin:Ba, 8oiq:Ba, 8oir:Ba, 8oit:Ba, 5ool:j, 5oom:j, 7pd3:j, 8pk0:j, 7po4:j, 7qh6:j, 7qh7:j, 7qi4:j, 7qi5:j, 7qi6:j, 8qsj:j, 8qu5:j, 6vlz:j, 6vmi:j, 8xt0:Lz, 8xt1:Lz, 8xt2:Lz, 8xt3:Lz, 6ydp:Bo, 6ydw:Bo, 6zm5:j, 6zm6:j, 6zs9:j, 6zsa:j, 6zsb:j, 6zsc:j, 6zsd:j, 6zse:j, 6zsg:j
2 6yxx:Ao 184 32 0.1647 0.0761 0.4375 0.004 7aoi:Ao, 6yxy:Ao
3 6hiv:Ao 183 32 0.1647 0.0765 0.4375 0.009 6hix:Ao
4 7aih:BP 195 32 0.1529 0.0667 0.4062 0.036 7am2:BP, 7ane:BP
5 3t99:A 327 47 0.1647 0.0428 0.2979 0.056 5bya:A, 5byb:A, 5dgh:A, 5dgi:A, 8g9e:A, 4hn2:A, 6n5c:A, 4nzm:A, 4nzn:A, 4nzo:A, 4q4c:A, 4q4d:A, 3t54:A, 3t7a:A, 3t9a:A, 3t9b:A, 3t9c:A, 3t9d:A, 3t9e:A, 3t9f:A
6 7d8c:A 1057 46 0.1765 0.0142 0.3261 0.89
7 2a3l:A 616 49 0.1765 0.0244 0.3061 0.97
8 3g5s:A 424 42 0.1647 0.0330 0.3333 3.5 3g5q:A, 3g5r:A
9 4q6w:A 376 20 0.1176 0.0266 0.5000 3.9 4q6w:B
10 6w64:A 928 31 0.1176 0.0108 0.3226 5.3
11 6w5c:A 1023 31 0.1176 0.0098 0.3226 5.4
12 1fr6:A 361 52 0.1765 0.0416 0.2885 5.6 1fr6:B, 8jb8:A, 8jb8:B, 1rgy:A
13 4hs9:A 287 21 0.1294 0.0383 0.5238 6.2 4gw3:A, 4gxn:A, 6jd9:A
14 6w62:A 910 29 0.1176 0.0110 0.3448 7.1
15 3hkz:A 836 22 0.1059 0.0108 0.4091 7.6 3hkz:I, 2y0s:A, 2y0s:W
16 7eu9:A 1078 29 0.1176 0.0093 0.3448 7.9 7d2l:A, 7d3j:A
17 4ayb:A 872 22 0.1059 0.0103 0.4091 8.5 2pmz:A, 2pmz:Q, 4v8s:AW, 4v8s:BA, 2waq:A, 2wb1:A, 2wb1:W
18 6mps:A 255 22 0.1176 0.0392 0.4545 9.6 4de9:A, 6mpt:A
19 2v6t:B 100 54 0.2000 0.1700 0.3148 9.8 2v6t:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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