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BioLiP
>protein
GGFYEIEAIRRKRVRKGKVQYLIKWRGWPETANTWEPLENLQSIADV

The query sequence (length=47) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7vyw:A 47 47 1.0000 1.0000 1.0000 1.15e-29
2 5ejw:A 80 38 0.4894 0.2875 0.6053 1.58e-13 5epj:A, 2kvm:A, 2l12:A, 2l1b:A, 4mn3:A, 8sii:A, 8sii:B, 6v2r:A, 4x3k:A, 4x3k:B, 4x3s:B, 4x3s:A, 4x3t:A, 4x3t:B, 4x3t:C, 4x3t:D, 4x3t:E, 4x3t:F, 4x3u:A, 4x3u:B
3 5epl:B 58 38 0.4681 0.3793 0.5789 1.63e-12 5epl:A
4 6asz:A 53 40 0.4681 0.4151 0.5500 1.97e-11 6at0:A, 1kna:A, 1kne:A, 6mha:A, 1q3l:A
5 5epk:A 54 38 0.4468 0.3889 0.5526 3.68e-11 3h91:A, 3h91:B
6 5eq0:A 55 38 0.3830 0.3273 0.4737 2.33e-10 3i91:A
7 3gv6:A 56 38 0.3830 0.3214 0.4737 1.62e-09 3i90:A, 3i90:B
8 3tzd:A 58 42 0.4043 0.3276 0.4524 2.11e-09 3dm1:A, 3dm1:C, 3dm1:G, 3dm1:E, 2l11:A
9 2rvn:A 83 40 0.4043 0.2289 0.4750 5.52e-09
10 1guw:A 73 32 0.4043 0.2603 0.5938 5.82e-09 6d07:A, 6d07:B, 6d08:A, 6d08:B
11 4u68:A 64 38 0.4255 0.3125 0.5263 9.19e-09 4quf:A, 4quf:B, 4quf:C, 4quf:D, 4quf:E, 4quf:F, 4u68:B, 4u68:C
12 8uxq:A 170 38 0.4043 0.1118 0.5000 2.24e-08 3fdt:A
13 1pfb:A 55 39 0.4255 0.3636 0.5128 2.69e-08 1pdq:A
14 7vrf:A 61 38 0.4255 0.3279 0.5263 6.82e-08 7vrf:B
15 6v2d:G 64 42 0.4468 0.3281 0.5000 1.03e-07 5jjz:A, 7slw:A, 7slw:B, 7slw:C, 7slw:D, 7slw:E, 7slw:F, 8sp6:A, 8sp6:B, 8sp6:C, 8sp6:D, 8sp6:E, 8sp6:F, 6v2d:I, 6v2d:K, 6v2d:A, 6v2d:C, 6v2d:E, 6v2h:A, 6v2h:C, 6v2h:E, 6v2h:G, 6v2h:I, 6v2h:K, 6v3n:A, 6v3n:B, 6v8w:A, 6v8w:B, 6v8w:C, 6v8w:D, 6v8w:E, 6v8w:F, 6v8w:G, 6v8w:H, 6v8w:I, 6v8w:J, 6v8w:K, 6v8w:L, 6v8w:M, 6v8w:N, 6v8w:O, 6v8w:P, 6v8w:Q, 6v8w:R, 6v8w:S, 6v8w:T, 6v8w:U, 6v8w:V, 6v8w:W, 6v8w:X, 6v8w:Y, 6v8w:Z
16 6v41:AAA 61 42 0.3830 0.2951 0.4286 2.96e-07
17 7n27:A 57 40 0.3830 0.3158 0.4500 5.59e-07 7n27:D, 7n27:B, 7n27:C, 7n27:E, 7n27:F
18 3qo2:A 61 44 0.3191 0.2459 0.3409 1.36e-05 7m5u:A, 3qo2:D, 3qo2:B, 3qo2:C, 3r93:A, 3r93:D, 3r93:B, 3r93:C, 3svm:A, 6v2s:A, 6v2s:B
19 2rsn:A 75 39 0.4043 0.2533 0.4872 1.60e-05 3g7l:A
20 2b2w:A 177 26 0.3191 0.0847 0.5769 2.61e-05 5afw:A, 2b2t:A, 2b2u:A, 2b2v:A, 4nw2:A, 4nw2:C, 4o42:A
21 6s47:Bi 952 36 0.2979 0.0147 0.3889 0.005
22 6ryr:W 708 22 0.2553 0.0169 0.5455 0.013 2l75:A, 1mm2:A, 6q3m:D, 6ryu:W, 6ryu:V
23 4fsx:A 680 27 0.1915 0.0132 0.3333 0.019 4fsx:B, 4ft2:B, 4ft2:A
24 7ubu:A 708 27 0.1915 0.0127 0.3333 0.019 4ft4:A, 4ft4:B
25 6q3m:C 219 22 0.2553 0.0548 0.5455 0.035 6q3m:A, 6q3m:B
26 6guu:B 204 22 0.2553 0.0588 0.5455 0.049 6guu:A
27 8rv0:Y 495 28 0.1702 0.0162 0.2857 2.3 8rvm:YYY, 8rxu:AAA, 8rxu:MMM, 8rxu:YYY
28 7ry3:C 1048 35 0.2979 0.0134 0.4000 2.8 7m4p:B
29 8uu4:R 113 23 0.2340 0.0973 0.4783 2.9 8a57:S, 8a5i:S, 8a63:S, 7nhn:S, 8uu5:R, 8uu6:R, 8uu7:R, 8uu8:R, 8uu9:R, 8uua:R
30 6ftx:W 878 50 0.2766 0.0148 0.2600 3.0 6g0l:W, 5j70:A, 5j70:B, 3mwy:W, 3ted:A
31 6ftx:W 878 29 0.2128 0.0114 0.3448 4.1 6g0l:W, 5j70:A, 5j70:B, 3mwy:W, 3ted:A
32 9gd1:W 849 26 0.2128 0.0118 0.3846 3.1
33 9gd1:W 849 29 0.2128 0.0118 0.3448 3.8
34 7tn2:W 895 26 0.2128 0.0112 0.3846 3.1 9gd2:W, 9gd3:W
35 7tn2:W 895 29 0.2128 0.0112 0.3448 3.9 9gd2:W, 9gd3:W
36 4zjl:A 1044 35 0.2766 0.0125 0.3714 3.2 3aob:C, 3aoc:C, 3aod:A, 3aod:C, 9bfh:A, 9bfm:A, 9bfn:A, 9bft:A, 2dr6:A, 2drd:A, 4dx5:B, 4dx7:A, 4dx7:B, 8ffs:A, 5jmn:A, 5jmn:B, 5jmn:C, 5nc5:B, 5ng5:K, 5ng5:L, 5ng5:J, 7ouk:A, 7ouk:B, 7ouk:C, 7oul:A, 7oul:C, 7oum:A, 7oum:B, 7oum:C, 8p1i:A, 8p1i:B, 6q4n:A, 6q4n:B, 6q4n:C, 6q4o:B, 2rdd:A, 1t9u:A, 1t9v:A, 1t9w:A, 1t9x:A, 1t9y:A, 4u8v:B, 4u8y:B, 4u95:B, 2w1b:A, 3w9h:B, 4zjl:D, 4zjo:A, 4zjo:D, 4zjq:A, 4zjq:D, 6zo5:B, 6zo5:C, 6zo6:B, 6zo6:C, 6zo7:A, 6zo7:B, 6zo8:B, 6zo8:C, 6zo9:B, 6zob:A, 6zoc:A, 6zoc:B, 6zod:A, 6zod:B, 6zof:B, 6zog:B, 6zoh:A, 6zoh:B, 6zoh:C
37 6g0l:M 855 50 0.2766 0.0152 0.2600 3.2 7nkx:W, 5o9g:W
38 6g0l:M 855 29 0.2128 0.0117 0.3448 3.9 7nkx:W, 5o9g:W
39 8d2q:A 906 43 0.2553 0.0132 0.2791 3.4
40 6nic:D 360 11 0.1489 0.0194 0.6364 3.5 6nic:A, 6nic:C
41 8d2o:A 749 43 0.2553 0.0160 0.2791 3.6
42 6wbr:A 942 43 0.2553 0.0127 0.2791 3.6 6wc0:A
43 8d2k:A 1105 43 0.2553 0.0109 0.2791 3.9 8d2l:A, 8d2n:A, 8d2p:A
44 7b8s:C 589 35 0.2766 0.0221 0.3714 4.4 7b8r:C, 7b8t:C, 5eno:C, 5enp:C, 5enq:C, 5enr:C, 5ens:C, 5ent:C
45 8f4r:B 1033 35 0.2553 0.0116 0.3429 4.9
46 2yw2:A 423 48 0.2979 0.0331 0.2917 6.5 2yw2:B
47 3ui2:A 234 24 0.1702 0.0342 0.3333 6.5 3dep:A, 2hug:A
48 4gie:A 288 21 0.2128 0.0347 0.4762 6.6 4fzi:A, 4fzi:B
49 4ii9:A 337 13 0.1277 0.0178 0.4615 6.9 3gkr:A, 1ne9:A, 1p4n:A, 1xe4:A, 1xf8:A, 7z5y:A, 7z5z:A, 7z6a:A, 7z6k:A
50 5e4w:C 105 24 0.1702 0.0762 0.3333 7.2 5e4w:D, 5e4x:A
51 5yq0:C 304 32 0.2128 0.0329 0.3125 7.4 5yq0:G
52 8yl9:A 346 35 0.2553 0.0347 0.3429 8.3 8yl9:B, 8yl9:I

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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