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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GFFDADLSYPTVRTERMKHKRRRLVQGPNSYFMDVSCPRCRQVTVVYSHATTSVECKGCSKKLCRPTGGKALLVEGCGYR
RKPD

The query sequence (length=84) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8rxh:Sc 85 84 1.0000 0.9882 1.0000 6.03e-59 8a3w:Sc, 8a98:Sc, 6az1:c, 8ovj:Sc, 8rxx:Sc, 5t2a:AW
2 8ova:AW 85 84 0.7976 0.7882 0.7976 4.96e-49 7ase:S, 5opt:S, 8ove:AW, 4v8m:AW
3 4v6w:Ab 84 79 0.5476 0.5476 0.5823 2.23e-29 6xu6:Ab, 6xu7:Ab, 6xu8:Ab
4 6zj3:Sc 84 82 0.5119 0.5119 0.5244 3.10e-29
5 5xxu:b 79 79 0.5000 0.5316 0.5316 8.90e-28
6 5it7:b 82 77 0.5119 0.5244 0.5584 4.15e-27 7a1g:f, 7ajt:Db, 7aju:Db, 7b7d:f, 8bn3:D7, 8bqd:f, 8bqx:f, 8c00:f, 8c01:f, 8c83:f, 8cah:f, 8cas:f, 8cbj:b, 8ccs:3, 8cdl:3, 8cdr:3, 8ceh:3, 8cf5:3, 8cg8:3, 8cgn:3, 8civ:3, 8cku:3, 8cmj:3, 7d4i:Sc, 7d5t:Sc, 7d63:Sc, 5dat:D7, 5dat:d7, 5dc3:D7, 5dc3:d7, 5dge:D7, 5dge:d7, 5dgf:D7, 5dgf:d7, 5dgv:D7, 5dgv:d7, 6eml:f, 8eub:Bb, 8evp:Bb, 8evq:Bb, 8evr:Bb, 8evs:Bb, 8evt:Bb, 8ewb:Bb, 8ewc:Bb, 6fai:b, 5fci:D7, 5fci:d7, 5fcj:D7, 5fcj:d7, 6fyx:b, 6fyy:b, 6gq1:AR, 6gqb:AR, 6gqv:AR, 6gsm:b, 6gsn:b, 6hhq:c, 6hhq:d7, 5i4l:D7, 5i4l:d7, 6i7o:f, 6i7o:fb, 8i7j:b, 5it9:b, 3j6x:27, 3j6y:27, 3j77:27, 3j78:27, 3j80:b, 3j81:b, 3jam:b, 3jap:b, 5juo:YB, 5jup:YB, 5jus:YB, 5jut:YB, 5juu:YB, 8k2d:Sb, 8k82:Sb, 6ke6:Sc, 5ll6:f, 6lqp:Sc, 6lqq:Sc, 6lqr:Sc, 6lqs:Sc, 6lqt:Sc, 5lyb:D7, 5lyb:d7, 5m1j:b2, 5mc6:f, 5mei:d7, 5mei:c, 7mpi:Bb, 7mpj:Bb, 7n8b:Bb, 5ndg:D7, 5ndg:d7, 5ndv:D7, 5ndv:d7, 5ndw:D7, 5ndw:d7, 7nrc:Sf, 7nrd:Sf, 5obm:D7, 5obm:d7, 5on6:d7, 5on6:c, 7osa:eS27, 7osm:eS27, 6q8y:f, 6rbd:b, 6rbe:b, 7rr5:Sb, 8rw1:b, 6s47:Bc, 8s8d:b, 8s8e:b, 8s8f:b, 8s8g:b, 8s8h:b, 8s8i:b, 8s8j:b, 6snt:b, 6sv4:f, 6sv4:fb, 6sv4:fc, 6t4q:Sb, 6t7i:Sb, 6t7t:Sb, 6t83:bb, 6t83:2, 5tbw:c, 5tbw:d7, 6tb3:f, 5tga:D7, 5tga:d7, 5tgm:D7, 5tgm:d7, 6tnu:f, 4u3m:D7, 4u3m:d7, 4u3n:D7, 4u3n:d7, 4u3u:D7, 4u3u:d7, 4u4n:D7, 4u4n:d7, 4u4o:D7, 4u4o:d7, 4u4q:D7, 4u4q:d7, 4u4r:D7, 4u4r:d7, 4u4u:D7, 4u4u:d7, 4u4y:D7, 4u4y:d7, 4u4z:D7, 4u4z:d7, 4u50:D7, 4u50:d7, 4u51:D7, 4u51:d7, 4u52:D7, 4u52:d7, 4u53:D7, 4u53:d7, 4u55:D7, 4u55:d7, 4u56:D7, 4u56:d7, 4u6f:D7, 4u6f:d7, 4uer:6, 6uz7:b, 4v6i:AX, 4v88:Ab, 4v88:Cb, 4v8y:A1, 4v8z:A1, 4v92:Bb, 6wdr:b, 6woo:bb, 7wtl:Sb, 7wtm:Sb, 7wtn:Sb, 7wto:Sb, 7wtp:Sb, 7wtq:Sb, 7wtr:Sb, 5wyj:Sc, 5wyk:Sc, 6xiq:AR, 6xir:AR, 8y0u:Sb, 6y7c:b, 6z6j:Sb, 6z6k:Sb, 6zce:c, 7zpq:Ab, 6zqa:Db, 6zqb:Db, 6zqc:Db, 6zqd:Db, 6zqe:Db, 6zqf:Db, 6zqg:Db, 7zrs:Ab, 6zu9:f, 7zuw:Ab, 7zux:Db, 6zvi:L, 7zw0:sf
7 8c3a:d 81 77 0.5119 0.5309 0.5584 8.80e-27 8c3a:DO, 8cq7:d, 8cq7:DO, 8cqw:d, 8cqw:DO, 8cre:d, 8cre:DO, 8oeq:d, 8oeq:DO, 7pzy:c, 7q08:c, 7q0f:c, 7q0p:c, 7q0r:c, 8q5i:c
8 7olc:Sb 81 80 0.5119 0.5309 0.5375 9.29e-27 7old:Sb, 8oo0:Sb, 7r81:c2, 6rxx:Cq, 7z3n:Sb, 7z3o:Sb
9 6fec:Y 84 77 0.5714 0.5714 0.6234 1.84e-25 7a01:L3, 7a09:R, 5a2q:b, 5aj0:Bb, 9bdl:AS27, 9bdn:AS27, 9bdp:AS27, 8bhf:c3, 9bkd:H, 9bln:H, 8btk:AA, 7cpu:Sb, 7cpv:Sb, 4d5l:b, 4d61:b, 6d90:cc, 6d9j:cc, 9f1b:AA, 9f1c:AA, 9f1d:AA, 5flx:b, 6g18:b, 6g4s:b, 6g4w:b, 6g51:b, 6g53:b, 6g5h:b, 6g5i:b, 8g5y:Sb, 8g5z:Sb, 8g60:Sb, 8g61:Sb, 8g6j:Sb, 8glp:Sb, 6gz3:Bb, 6gz4:Bb, 6gz5:Bb, 6hcf:c1, 6hcj:c2, 6hcm:c1, 6hcq:c2, 8ifd:3P, 8ife:3P, 6ip5:3P, 6ip6:3P, 6ip8:3P, 3j7p:Sb, 3j7r:Sb, 3jag:bb, 3jah:bb, 3jai:bb, 3jaj:Sb, 3jan:Sb, 8jdj:AN, 8jdk:AN, 8jdl:AN, 8jdm:AN, 7jqb:e, 7jqc:e, 5k0y:Y, 8k2c:Sb, 7k5i:b, 4kzx:b, 4kzy:b, 4kzz:b, 5lks:Sb, 7ls1:S3, 7ls2:S3, 5lzs:bb, 5lzt:bb, 5lzu:bb, 5lzv:bb, 5lzw:bb, 5lzx:bb, 5lzy:bb, 5lzz:bb, 7mdz:bb, 7mq8:NQ, 7mq9:NQ, 7mqa:NQ, 6mtb:bb, 6mtc:bb, 6mtd:bb, 6mte:bb, 7nwg:c2, 7nwh:bb, 7nwi:bb, 7o7y:AA, 7o7z:AA, 7o80:AA, 7o81:AA, 5oa3:b, 6ole:Sb, 6olf:Sb, 6olg:Bb, 6oli:Sb, 6olz:Bb, 6om0:Sb, 6om7:Sb, 7oya:b2, 7oyb:b2, 7oyc:b2, 7oyd:Bb, 8oz0:M, 8p03:c, 8p09:c, 8p2k:AA, 6p4g:c, 6p4h:c, 6p5i:c, 6p5j:c, 6p5k:c, 6p5n:c, 8pj1:H, 8pj2:H, 8pj3:H, 8pj4:H, 8pj5:H, 8pj6:H, 8ppk:b, 8ppl:Ab, 8q7z:AA, 8q87:AA, 7qgg:Sb, 8qoi:Sb, 7qp6:H, 7qp7:H, 7qvp:Sb, 7qvp:Rb, 6qzp:Sb, 7r4x:b, 6r5q:JJ, 6r6g:JJ, 6r6p:JJ, 6r7q:JJ, 8rg0:H, 8scb:bb, 6sgc:c1, 7syg:c, 7syh:c, 7syi:c, 7syj:c, 7syk:c, 7syl:c, 7sym:c, 7syn:c, 7syo:c, 7syp:c, 7syq:c, 7syr:c, 7sys:c, 7syt:c, 7syu:c, 7syv:c, 7syw:c, 7syx:c, 5t2c:AV, 8t4s:b, 7toq:AS27, 7tor:AS27, 7tql:b, 7ucj:Bb, 7uck:Bb, 4ug0:Sb, 4ujc:Cb, 4ujd:Cb, 4uje:Bb, 4v6x:Ab, 5vyc:b1, 5vyc:b2, 5vyc:b3, 5vyc:b4, 5vyc:b5, 5vyc:b6, 6w2s:c, 6w2t:c, 7wts:b, 7wtt:b, 7wtu:b, 7wtv:b, 7wtw:b, 7wtx:b, 7wtz:b, 7wu0:b, 6xa1:Sb, 7xnx:Sb, 7xny:Sb, 8xsx:Sb, 8xsy:Sb, 8xsz:Sb, 8xxl:Sb, 8xxm:Sb, 8xxn:Sb, 6y0g:Sb, 8y0w:Sb, 8y0x:Sb, 6y2l:Sb, 6y57:Sb, 6yal:c, 6yam:c, 6yan:c, 6ybw:H, 8yoo:Sb, 8yop:Sb, 6z6l:Sb, 6z6m:Sb, 6z6n:Sb, 7zjw:SB, 7zjx:SB, 6zlw:b, 6zm7:Sb, 6zme:Sb, 6zmi:Sb, 6zmo:Sb, 6zmt:b, 6zmw:H, 6zn5:b, 6zoj:b, 6zok:b, 6zon:R, 6zp4:R, 6zuo:b, 6zv6:b, 6zvh:b, 6zvj:R, 6zvk:L3, 6zxd:b, 6zxe:b, 6zxf:b, 6zxg:b, 6zxh:b
10 9bh5:Ab 82 80 0.5119 0.5244 0.5375 2.92e-25 9cai:Ab
11 8jiw:Bb 86 81 0.5476 0.5349 0.5679 1.07e-24 8auv:K, 8b2l:K1, 8ip8:xa, 8ip9:xa, 8ipa:xa, 8ipb:xa, 8r6f:b, 4v3p:SX, 4v7e:Bb
12 4bts:A6 80 77 0.4048 0.4250 0.4416 1.92e-24 4bts:B6, 4bts:C6, 4bts:D6, 4v5o:A6, 4v5o:B6
13 3j7a:4 76 73 0.4643 0.5132 0.5342 4.52e-24 3jbn:4, 3jbo:4, 3jbp:4, 6okk:d, 8tpu:S4
14 8br8:Se 80 68 0.4286 0.4500 0.5294 1.89e-22 8brm:Se, 8bsi:Se, 8bsj:Se, 8btd:Se, 8btr:Se, 8fvy:b, 8g4s:b, 7pwf:b, 7pwo:b1
15 8p5d:SBB 81 74 0.3810 0.3951 0.4324 8.89e-18 8p60:SBB, 8p60:RBB, 7qca:SBB
16 6rm3:SBB 82 76 0.3571 0.3659 0.3947 2.21e-17
17 5xyi:b 82 78 0.3452 0.3537 0.3718 3.43e-16
18 7qix:V 68 79 0.4643 0.5735 0.4937 3.81e-13 7qiz:LA
19 7qep:D7 82 77 0.3095 0.3171 0.3377 6.51e-13
20 6zu5:SBB 80 66 0.3214 0.3375 0.4091 6.92e-13
21 8hkx:S27E 59 55 0.2619 0.3729 0.4000 2.71e-08 8hky:S27E, 8hkz:S27E, 8hl1:S27E, 8hl2:S27E, 8hl3:S27E, 8hl4:S27E, 8hl5:S27E, 8wkp:S27E, 8wq2:S27E, 8wq4:S27E
22 6sw9:W 63 52 0.2381 0.3175 0.3846 1.00e-07 6swc:W, 6swd:W, 7zag:W, 7zah:W, 7zai:W, 7zhg:W
23 6tmf:Y 63 52 0.2381 0.3175 0.3846 1.67e-07 6skf:Ax, 6skg:Ax, 6th6:Ax
24 5jb3:W 63 50 0.2262 0.3016 0.3800 8.50e-07 5jbh:W, 4v4n:BW, 4v6u:AW
25 8tug:B 1041 43 0.1429 0.0115 0.2791 1.1 8tvp:B, 8tvq:B, 8tvs:B, 8tvv:B, 8tvw:B, 8tvx:B
26 8tvy:B 1207 43 0.1429 0.0099 0.2791 1.1 3gtg:B, 3gtj:B, 3gtk:B, 8jch:B, 8k5p:B, 7o4k:B, 7o4l:B, 5u5q:B, 5vvr:B, 5vvs:B
27 5c4j:B 1157 43 0.1429 0.0104 0.2791 1.2 4a3b:B, 4a3c:B, 4a3d:B, 4a3e:B, 4a3f:B, 4a3g:B, 4a3i:B, 4a3j:B, 4a3k:B, 4a3l:B, 4a3m:B, 4a93:B, 2b63:B, 2b8k:B, 6blo:B, 6blp:B, 6bm2:B, 6bm4:B, 6bqf:B, 4by1:B, 4by7:B, 2e2j:B, 3gtl:B, 3gtm:B, 3gto:B, 3gtp:B, 3gtq:B, 3h3v:C, 3hou:B, 3hou:N, 3hov:B, 3how:B, 3hox:B, 3hoy:B, 3hoz:B, 6i84:B, 3j0k:B, 2ja5:B, 2ja6:B, 2ja7:B, 2ja7:N, 2ja8:B, 7ked:B, 7kee:B, 7kef:B, 3m3y:B, 3m4o:B, 7ml4:B, 7nkx:B, 7nky:B, 2nvq:B, 2nvt:B, 2nvx:B, 5ot2:B, 3po3:B, 3qt1:B, 2r7z:B, 1r9t:B, 2r92:B, 2r93:B, 7riq:B, 7riw:B, 7rix:B, 7riy:B, 3rzd:B, 3rzo:B, 3s14:B, 3s15:B, 3s16:B, 3s17:B, 3s1m:B, 3s1n:B, 3s1q:B, 3s1r:B, 3s2d:B, 3s2h:B, 1sfo:B, 8ukq:B, 8ukr:B, 8uks:B, 8ukt:B, 8uku:B, 6upx:B, 6upz:B, 6uq0:B, 6uq1:B, 6uq2:B, 6uq3:B, 2vum:B, 4x67:B, 4x6a:B, 1y1v:B, 1y1w:B, 4y52:B, 1y77:B, 4y7n:B
28 6o6c:B 1165 43 0.1429 0.0103 0.2791 1.2 5c44:B, 2e2h:B, 9ja1:B, 2nvz:B, 6upy:B, 2yu9:B
29 8u9r:B 1060 43 0.1429 0.0113 0.2791 1.2 8u9x:B
30 4bxx:B 1097 43 0.1429 0.0109 0.2791 1.2 4bxz:B, 3cqz:B, 1i3q:B, 1i50:B, 1i6h:B, 1k83:B, 1nik:B, 2nvy:B, 1r5u:B, 1r9s:B, 1twa:B, 1twc:B, 1twf:B, 1twg:B, 1twh:B, 5w4u:B, 5w51:B, 1wcm:B
31 8cen:B 1180 43 0.1429 0.0102 0.2791 1.2 4bbr:B, 4bbs:B, 5c3e:B, 5c4a:B, 5c4x:B, 8ceo:B, 2e2i:B, 3fki:B, 5fmf:B, 5fyw:B, 5fz5:B, 6gyk:B, 6gyl:B, 6gym:B, 3i4m:B, 3i4n:B, 5ip7:B, 5ip9:B, 3k1f:B, 7mei:b, 7mei:B, 7mk9:B, 7mka:b, 7ml0:B, 7ml1:B, 7ml2:B, 7o4i:B, 7o4j:B, 7o72:B, 7o73:B, 7o75:B, 5oqj:B, 5oqm:B, 3po2:B, 7rim:B, 7rip:B, 5sva:B, 4v1m:B, 4v1n:B, 4v1o:B, 7zs9:B, 7zsa:B, 7zsb:B
32 3k7a:B 1122 43 0.1429 0.0107 0.2791 1.2
33 7mqa:SC 229 40 0.1310 0.0480 0.2750 2.1 2ipx:A, 7se7:A, 7se8:A, 7se8:B, 7se9:A, 7se9:B, 7sea:A, 7seb:A, 7sec:A, 7sec:B, 7sed:A
34 4df3:A 230 37 0.1310 0.0478 0.2973 2.7 4df3:B
35 7r78:A 1880 43 0.1429 0.0064 0.2791 3.1
36 7t02:A 1752 43 0.1429 0.0068 0.2791 3.1
37 7r76:A 1834 43 0.1429 0.0065 0.2791 3.2 7r77:A
38 2ds5:B 44 29 0.0952 0.1818 0.2759 4.4 2ds5:A, 2ds6:A, 2ds6:B, 2ds7:A, 2ds8:B, 2ds8:A, 1ovx:A, 1ovx:B
39 2yk0:A 698 20 0.0952 0.0115 0.4000 4.6 2xu0:A
40 5a9a:A 242 23 0.1310 0.0455 0.4783 4.8
41 6gh2:A 908 15 0.1071 0.0099 0.6000 5.8 6gh2:B, 6gh3:A, 6gh3:B
42 4qxd:B 289 35 0.1310 0.0381 0.3143 8.8 4qxd:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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