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BioLiP
>protein
GFDLNDFLEQLRQDDKVLVRMEAIINSMTMKERAKPEIIKGSRKRRIAAGSGMQVQDVNRLLKQFDDMQRMMKKMK

The query sequence (length=76) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5gaf:i 398 79 0.9868 0.1884 0.9494 6.33e-45 1dul:A, 1hq1:A, 3lqx:A, 2pxb:A, 2pxd:A, 2pxe:A, 2pxf:A, 2pxk:A, 2pxl:A, 2pxp:A, 2pxq:A, 2pxt:A, 2pxu:A, 2pxv:A
2 2j28:9 430 104 0.9868 0.1744 0.7212 1.17e-40 5aka:5
3 5gad:i 450 98 0.9079 0.1533 0.7041 1.44e-36 4c7o:A, 4c7o:C, 5gag:i, 5gah:i, 5nco:i, 7o9g:A, 7o9i:A, 2xkv:C, 2xxa:A, 2xxa:C
4 7o5b:g 403 103 0.6184 0.1166 0.4563 1.38e-19 7o9f:A, 7o9f:C, 7o9f:B, 4ue4:C
5 3ndb:B 420 80 0.3947 0.0714 0.3750 1.23e-10 2v3c:C, 2v3c:D, 4xco:D
6 7epk:A 426 56 0.3816 0.0681 0.5179 3.65e-10
7 3dm5:A 416 58 0.3421 0.0625 0.4483 5.75e-09 3dm5:B
8 4xco:C 157 57 0.3158 0.1529 0.4211 1.04e-08
9 1qzw:A 432 68 0.3947 0.0694 0.4412 1.20e-07 3kl4:A, 5l3s:A, 5l3s:C, 5l3s:E, 5l3s:G, 5l3v:A, 5l3v:B, 1qzw:C, 1qzw:E, 1qzw:G, 3zn8:M
10 6z1p:AT 166 59 0.2105 0.0964 0.2712 6.36e-04
11 3jaj:z 426 33 0.1974 0.0352 0.4545 0.005 6frk:x, 3jan:z, 7obq:x, 6r6g:AB
12 7obr:x 488 34 0.1974 0.0307 0.4412 0.007 2go5:W, 2j37:W, 5l3q:A, 5l3q:C, 1mfq:C, 7nfx:x, 7qwq:x, 1ry1:W, 4ue5:D, 6y2z:A, 6y32:A, 6y32:C, 6y32:E, 6y32:G
13 7uea:U 364 32 0.1447 0.0302 0.3438 1.8 3bsd:A, 3eni:A, 3eni:C, 8gwa:1, 8gwa:2, 8gwa:3, 8gwa:4, 8gwa:5, 8gwa:6, 5h8z:A, 5h8z:C, 6m32:E, 6m32:F, 6m32:G, 7uea:V, 7uea:W, 7ueb:U, 7ueb:V, 7ueb:W, 7ueb:X, 7ueb:Y, 7ueb:Z, 7z6q:E, 7z6q:F, 7z6q:G, 7z6q:H, 7z6q:I, 7z6q:J
14 8hwy:A 287 66 0.2632 0.0697 0.3030 1.8 8hwy:B, 8jku:A, 8jku:B
15 3qo8:A 441 47 0.1711 0.0295 0.2766 2.7 3qo7:A
16 7xyz:B 456 15 0.1447 0.0241 0.7333 4.1 7xv2:A, 7xyy:A, 7xyy:B, 7xyz:A, 7xyz:C, 7xyz:D, 7xz0:A, 7xz0:B, 7xz1:A, 7xz1:B, 7xz2:A, 7xz2:B, 7xz2:C, 7xz2:D
17 7xt2:B 388 15 0.1447 0.0284 0.7333 4.3 7xt2:A
18 8jyt:C 286 66 0.2500 0.0664 0.2879 8.2 8jyt:A, 8jyt:B, 8jyt:D
19 8bk1:A 288 63 0.2500 0.0660 0.3016 9.6 8bj5:A, 8bj5:B, 8bj5:C, 8bj5:D, 8bk1:B, 8bk1:C, 8bk1:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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