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BioLiP
>protein
GEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEKEE

The query sequence (length=56) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5ejw:A 80 56 1.0000 0.7000 1.0000 1.79e-35 5epj:A, 2kvm:A, 2l12:A, 2l1b:A, 4mn3:A, 8sii:A, 8sii:B, 6v2r:A, 4x3k:A, 4x3k:B, 4x3s:B, 4x3s:A, 4x3t:A, 4x3t:B, 4x3t:C, 4x3t:D, 4x3t:E, 4x3t:F, 4x3u:A, 4x3u:B
2 5epl:B 58 55 0.7143 0.6897 0.7273 1.56e-26 5epl:A
3 5eq0:A 55 55 0.6786 0.6909 0.6909 5.79e-25 3i91:A
4 3gv6:A 56 54 0.6964 0.6964 0.7222 8.34e-25 3i90:A, 3i90:B
5 5epk:A 54 54 0.6429 0.6667 0.6667 1.24e-23 3h91:A, 3h91:B
6 1pfb:A 55 50 0.5536 0.5636 0.6200 6.73e-17 1pdq:A
7 7vyw:A 47 38 0.4107 0.4894 0.6053 2.67e-13
8 6asz:A 53 48 0.4643 0.4906 0.5417 1.20e-12 6at0:A, 1kna:A, 1kne:A, 6mha:A, 1q3l:A
9 3tzd:A 58 47 0.4107 0.3966 0.4894 1.22e-11 3dm1:A, 3dm1:C, 3dm1:G, 3dm1:E, 2l11:A
10 7n27:A 57 45 0.3929 0.3860 0.4889 2.15e-10 7n27:D, 7n27:B, 7n27:C, 7n27:E, 7n27:F
11 2rvn:A 83 50 0.3750 0.2530 0.4200 4.03e-10
12 1guw:A 73 39 0.3750 0.2877 0.5385 9.89e-10 6d07:A, 6d07:B, 6d08:A, 6d08:B
13 8uxq:A 170 48 0.3929 0.1294 0.4583 1.28e-09 3fdt:A
14 3qo2:A 61 49 0.4107 0.3770 0.4694 2.35e-09 7m5u:A, 3qo2:D, 3qo2:B, 3qo2:C, 3r93:A, 3r93:D, 3r93:B, 3r93:C, 3svm:A, 6v2s:A, 6v2s:B
15 6v41:AAA 61 45 0.3750 0.3443 0.4667 3.76e-09
16 6v2d:G 64 42 0.3750 0.3281 0.5000 1.79e-07 5jjz:A, 7slw:A, 7slw:B, 7slw:C, 7slw:D, 7slw:E, 7slw:F, 8sp6:A, 8sp6:B, 8sp6:C, 8sp6:D, 8sp6:E, 8sp6:F, 6v2d:I, 6v2d:K, 6v2d:A, 6v2d:C, 6v2d:E, 6v2h:A, 6v2h:C, 6v2h:E, 6v2h:G, 6v2h:I, 6v2h:K, 6v3n:A, 6v3n:B, 6v8w:A, 6v8w:B, 6v8w:C, 6v8w:D, 6v8w:E, 6v8w:F, 6v8w:G, 6v8w:H, 6v8w:I, 6v8w:J, 6v8w:K, 6v8w:L, 6v8w:M, 6v8w:N, 6v8w:O, 6v8w:P, 6v8w:Q, 6v8w:R, 6v8w:S, 6v8w:T, 6v8w:U, 6v8w:V, 6v8w:W, 6v8w:X, 6v8w:Y, 6v8w:Z
17 4u68:A 64 49 0.3571 0.3125 0.4082 2.21e-06 4quf:A, 4quf:B, 4quf:C, 4quf:D, 4quf:E, 4quf:F, 4u68:B, 4u68:C
18 7vrf:A 61 51 0.3393 0.3115 0.3725 4.51e-06 7vrf:B
19 2rsn:A 75 42 0.3036 0.2267 0.4048 6.87e-05 3g7l:A
20 2b2w:A 177 25 0.2321 0.0734 0.5200 2.07e-04 5afw:A, 2b2t:A, 2b2u:A, 2b2v:A, 4nw2:A, 4nw2:C, 4o42:A
21 6s47:Bi 952 53 0.3214 0.0189 0.3396 2.95e-04
22 6ryr:W 708 25 0.1964 0.0155 0.4400 0.031 2l75:A, 1mm2:A, 6q3m:D, 6ryu:W, 6ryu:V
23 3oa6:A 84 23 0.1607 0.1071 0.3913 0.11 3oa6:B
24 6q3m:C 219 25 0.1964 0.0502 0.4400 0.13 6q3m:A, 6q3m:B
25 6guu:B 204 25 0.2143 0.0588 0.4800 0.13 6guu:A
26 7ubu:A 708 29 0.1786 0.0141 0.3448 0.16 4ft4:A, 4ft4:B
27 4fsx:A 680 29 0.1786 0.0147 0.3448 0.16 4fsx:B, 4ft2:B, 4ft2:A
28 7uci:A 686 37 0.2321 0.0190 0.3514 1.1 7uci:B
29 7ucl:A 616 37 0.2321 0.0211 0.3514 1.1 7ucl:B
30 5fm6:A 426 42 0.2679 0.0352 0.3571 3.6 5fm7:A, 4ww4:A
31 7tn2:W 895 41 0.2321 0.0145 0.3171 4.8 9gd2:W, 9gd3:W
32 9gd1:W 849 39 0.2321 0.0153 0.3333 4.9
33 6ftx:W 878 41 0.2321 0.0148 0.3171 4.9 6g0l:W, 5j70:A, 5j70:B, 3mwy:W, 3ted:A
34 6g0l:M 855 41 0.2321 0.0152 0.3171 5.0 7nkx:W, 5o9g:W
35 3ui2:A 234 28 0.2500 0.0598 0.5000 5.3 3dep:A, 2hug:A
36 5e4w:C 105 28 0.2500 0.1333 0.5000 5.4 5e4w:D, 5e4x:A
37 6jt5:A 409 19 0.1250 0.0171 0.3684 6.1 6jwf:A, 6jwf:B
38 7zi4:C 447 48 0.3036 0.0380 0.3542 6.6 9c57:E, 9c57:C, 9c57:A, 9c62:C, 9c62:E, 9c62:A, 6hts:A, 6hts:C, 6hts:E, 5oaf:A, 5oaf:C, 5oaf:E, 8x15:M, 8x15:O, 8x15:Q, 8x19:M, 8x19:O, 8x19:Q, 8x1c:M, 8x1c:O, 8x1c:Q, 8xvg:A, 8xvg:C, 8xvg:E, 8xvt:A, 8xvt:C, 8xvt:E, 7zi4:A, 7zi4:E
39 1ktg:A 137 32 0.1964 0.0803 0.3438 9.4 1ktg:B
40 6f7c:F 281 34 0.1964 0.0391 0.3235 9.9 7zx2:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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