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BioLiP
>protein
GELAQSIKELAKSIKEEAWSIKELAQSIKG

The query sequence (length=30) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6g68:H 30 30 0.9667 0.9667 0.9667 2.57e-12 6g68:L, 6g68:M, 6g68:O, 6g69:I, 6g69:M
2 4pnb:D 30 30 0.8667 0.8667 0.8667 3.55e-11
3 7bau:D 30 30 0.7000 0.7000 0.7000 1.45e-09 7bau:J, 7bau:E, 7bau:G, 7bau:I
4 6g6a:B 30 30 0.7000 0.7000 0.7000 1.93e-09 6g6b:A, 6g6c:H, 6g6c:I, 6g6c:P, 6g6c:Q, 6g6c:R, 6g6c:S, 6g6c:U, 6g6c:X
5 8b16:A 30 30 0.6000 0.6000 0.6000 2.63e-09 8b16:L, 8b16:H, 8b16:J, 8b16:D, 7bas:B, 7bas:A
6 7bat:B 30 30 0.7333 0.7333 0.7333 5.62e-09 7baw:D, 7baw:F
7 6g6f:C 30 30 0.6000 0.6000 0.6000 1.59e-08 6g6f:A, 6g6f:B, 6g6f:F, 6g6f:G
8 7bo9:A 30 30 0.5667 0.5667 0.5667 2.59e-08 7bo9:D
9 6eiz:A 30 30 0.6667 0.6667 0.6667 3.67e-08 6eiz:C, 6eiz:E, 4pn9:C, 4pn9:E
10 5ez8:E 30 30 0.6000 0.6000 0.6000 1.53e-07 5ez8:G, 5ez8:A, 7nfj:C, 7nfj:E, 4pna:B, 4pna:D, 4pna:A, 4pna:G
11 7a1t:C 30 30 0.5667 0.5667 0.5667 1.85e-06 7a1t:E, 7bim:D, 7bim:F, 7bim:H, 7bim:M, 7bim:P, 7bim:R, 7bim:j, 7bim:U, 7bim:W, 7bim:a, 7bim:c, 7bim:B, 7bim:g, 7bim:i, 7qwd:B, 7qwd:E, 7qwe:B, 7qwe:C, 7qwe:F
12 5ez9:F 30 30 0.4000 0.4000 0.4000 5.45e-05 5ez9:B, 5ezc:F, 5ezc:B, 7nfn:C, 7nfn:G, 7nfn:I, 7nfn:M
13 7qwa:C 30 30 0.4333 0.4333 0.4333 5.89e-05 7qwa:D
14 7qwb:E 30 30 0.4333 0.4333 0.4333 7.75e-05 6zt1:D, 6zt1:F, 6zt1:A, 6zt1:H, 6zt1:J
15 8qac:C 30 26 0.4000 0.4000 0.4615 0.006
16 4h8g:F 30 24 0.5333 0.5333 0.6667 0.027 4h8g:H
17 8qab:A 30 26 0.4000 0.4000 0.4615 0.13 8qab:D
18 6idw:A 322 22 0.3333 0.0311 0.4545 1.2 6idw:B, 6idw:C, 6idw:D
19 4pnd:A 30 30 0.3333 0.3333 0.3333 1.9 4pnd:C
20 4yrc:A 419 22 0.3333 0.0239 0.4545 3.5 3hrk:A, 3hrk:B, 3lc0:A, 4yp0:A, 4ypf:A, 4yre:A, 4yre:B, 4yrf:A, 4yrg:A, 4yri:A, 4yrj:A, 4yrk:A, 4yrk:B, 4yrl:A, 4yrm:A, 4yrm:B, 4yrn:A, 4yrn:B, 4yro:A, 4yrp:A, 4yrp:B, 4yrq:A, 4yrr:A, 4yrr:B, 4yrs:A, 4yrt:A
21 5cyp:D 227 20 0.3000 0.0396 0.4500 7.4
22 3fy4:A 522 19 0.2667 0.0153 0.4211 9.2 3fy4:B, 3fy4:C
23 4zda:A 735 30 0.3667 0.0150 0.3667 9.3 4zda:B, 4zda:C, 4zda:D, 4zda:E, 4zda:F
24 4lut:A 375 17 0.3333 0.0267 0.5882 9.9 4lus:B, 4lut:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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