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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLITLSRT
HPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDP
ARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDAPP

The query sequence (length=225) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2asb:A 226 222 0.9867 0.9823 1.0000 2.56e-159 2atw:A, 2atw:C
2 6tqn:A 495 218 0.3778 0.1717 0.3899 1.44e-45 6gov:A, 5lm7:A, 5lm7:C, 5lm9:A, 5ms0:M, 6tqo:A, 1u9l:A, 1u9l:B, 7ubn:N, 6xas:G
3 7urp:A 159 73 0.0889 0.1258 0.2740 0.098
4 1urj:B 1030 110 0.1511 0.0330 0.3091 0.67 1urj:A
5 8btj:A 403 71 0.1022 0.0571 0.3239 2.4 8btj:B
6 1j4w:A 145 105 0.1022 0.1586 0.2190 2.8 6y2c:A
7 3wqb:A 597 55 0.0578 0.0218 0.2364 4.8 3hjr:A
8 4g56:A 617 92 0.0889 0.0324 0.2174 8.4 4g56:C
9 2q1f:A 991 61 0.0889 0.0202 0.3279 9.1 2q1f:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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