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BioLiP
>protein
GDTSPAQLIAGYEAAAGAPADAERGRALFLSTQTGGKPDTPSCTTCHGADVTRAGQTRTGKEIAPLAPSATPDRFTDSAR
VEKWLGRNCNSVIGRDCTPGEKADLLAWLAAQ

The query sequence (length=112) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1dw0:A 112 112 1.0000 1.0000 1.0000 1.43e-78 1dw0:B, 1dw0:C, 1dw1:A, 1dw1:B, 1dw1:C, 1dw2:A, 1dw2:B, 1dw2:C, 1dw3:A, 1dw3:B, 1dw3:C
2 1e8e:A 124 72 0.2679 0.2419 0.4167 9.16e-17 1gu2:A, 1gu2:B, 1oae:A, 1oae:B
3 1h1o:A 172 98 0.2232 0.1453 0.2551 0.041 1h1o:B
4 5mab:A 259 38 0.1607 0.0695 0.4737 0.049 5mab:B, 5mab:C, 5mvo:A, 5mvo:B, 5mvo:C
5 7z36:B 446 28 0.0893 0.0224 0.3571 3.1 6h3a:A, 6h3a:F, 6qaj:A, 6qaj:B, 6qu1:A, 2yvr:A, 2yvr:B, 7z36:A
6 6xyr:A 348 28 0.0893 0.0287 0.3571 3.3
7 5j04:A 424 74 0.1964 0.0519 0.2973 4.7 5j04:B, 4rop:A
8 8aya:B 298 84 0.1786 0.0671 0.2381 6.4 4ds8:B, 5jo2:B, 3kb3:B, 4lg5:B, 4lgb:B, 5mn0:B, 7mwn:B, 3nmt:B, 5or2:B, 5or6:B, 3qn1:B, 5vs5:B, 4wvo:B, 3zvu:B
9 3rt0:A 328 63 0.1607 0.0549 0.2857 6.6 7avw:B, 8ay3:B, 8ay6:B, 8ay7:B, 8ay8:B, 8ay9:B, 5jo1:B, 4la7:B, 4lga:B, 3rt0:B, 3ujg:B, 5vr7:B, 5vro:B, 5vsq:B, 5vsr:B, 5vt7:B, 6zuc:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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