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BioLiP
>protein
GDRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCPLK

The query sequence (length=42) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2cqf:A 63 42 1.0000 0.6667 1.0000 6.43e-27
2 2li8:A 63 42 1.0000 0.6667 1.0000 9.65e-27
3 5udz:A 139 42 1.0000 0.3022 1.0000 1.41e-26 8ops:B, 8opt:B, 8ost:B, 3trz:A, 3trz:B, 3trz:C, 3trz:D, 3trz:E, 3trz:F, 3ts0:A, 3ts0:B, 3ts2:A, 3ts2:B, 5udz:B
4 2ec7:A 49 40 0.3571 0.3061 0.3750 1.08e-04
5 2a51:A 39 37 0.3810 0.4103 0.4324 0.006
6 7s7b:F 352 26 0.2143 0.0256 0.3462 0.018 7s7b:B, 7s7c:B
7 5w0n:A 379 27 0.2143 0.0237 0.3333 0.13 5w0m:A, 5w0m:C, 5w0n:B
8 6rwg:A 157 37 0.3333 0.0892 0.3784 0.23 1a1t:A, 1aaf:A, 1bj6:A, 2buo:A, 1esk:A, 2exf:A, 1f6u:A, 5i1r:A, 2jzw:A, 2l4l:A, 2m3z:A, 1mfs:A, 1q3y:A, 1q3z:A, 7r7p:I, 7r7p:L
9 4v6w:CT 158 22 0.2143 0.0570 0.4091 0.54 6xu6:CT, 6xu7:CT, 6xu8:CT
10 5w0b:A 334 25 0.2143 0.0269 0.3600 0.73
11 2bl6:A 37 36 0.3095 0.3514 0.3611 1.7
12 3nyb:B 64 15 0.2143 0.1406 0.6000 2.1
13 7c4c:A 332 40 0.3333 0.0422 0.3500 2.5 7c42:A, 7c43:A, 7c45:A, 7c47:A, 7c4b:A
14 2o4u:X 331 14 0.2143 0.0272 0.6429 2.7 2poq:X
15 9fmd:U 295 19 0.1905 0.0271 0.4211 3.1 8c6j:h, 6icz:Z, 6qdv:c, 7w5a:1, 7w5b:1, 5xjc:Z
16 2ihx:A 50 40 0.2619 0.2200 0.2750 4.2
17 2ihx:A 50 17 0.1905 0.1600 0.4706 7.3
18 6bk8:O 229 19 0.1905 0.0349 0.4211 4.3
19 6exn:c 204 19 0.1905 0.0392 0.4211 5.2
20 2lli:A 124 15 0.2143 0.0726 0.6000 6.6
21 5m5w:B 1183 34 0.2381 0.0085 0.2941 6.6 4c2m:B, 4c2m:Q, 4c3h:B, 4c3i:B, 4c3j:B, 5g5l:B, 6h67:B, 6h68:B, 6hko:B, 6hlq:B, 6hlr:B, 5m3f:B, 5m3m:B, 5m5x:B, 5m5y:B, 5m64:B, 5n5y:B, 5n5z:B, 5n60:B, 5n61:B, 5oa1:B, 6rqh:B, 6rql:B, 6rqt:B, 6rrd:B, 6rui:B, 6ruo:B, 6rwe:B, 6tps:B, 5w5y:B, 5w64:B, 5w65:B, 5w66:B, 4ym7:AB, 4ym7:BB, 4ym7:CB, 4ym7:DB, 4ym7:EB, 4ym7:FB

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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