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BioLiP
>protein
GDAEIKGIKPKVIEEYSLGPSNDSWKSLMSSAKDTPLQYDHMNRESLKKYFNPNAQLIEDPLDKPIQYRVCEKCGKPLAL
TAIVDHLE

The query sequence (length=88) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3mhh:E 92 91 0.9886 0.9457 0.9560 2.70e-59 6aqr:E, 4fip:D, 4fip:H, 4fjc:D, 4fk5:E, 3m99:D, 3mhs:E, 6t9l:N, 4wa6:E, 4zux:Y, 4zux:d, 4zux:i, 4zux:n
2 4w4u:E 84 88 0.9205 0.9643 0.9205 4.25e-54 4fjc:H, 4w4u:H, 4wa6:H
3 2lo3:A 44 37 0.4205 0.8409 1.0000 5.68e-22
4 3mhh:C 93 42 0.1705 0.1613 0.3571 0.051 6aqr:C, 4fk5:C, 3kjl:E, 3kjl:H, 3m99:B, 3mhs:C, 6t9l:M, 4wa6:C, 4zux:W, 4zux:b, 4zux:g, 4zux:l
5 6sg9:Fe 122 22 0.1023 0.0738 0.4091 1.0 6sgb:Fe
6 6z1p:Bw 662 45 0.1477 0.0196 0.2889 1.2
7 6dm6:A 378 62 0.2159 0.0503 0.3065 1.6 6dm6:B, 6ptv:B, 6ptv:C
8 6gjc:A 2770 35 0.1136 0.0036 0.2857 2.4 6gjc:B, 6gjc:C, 6gjc:D, 6gjc:E, 6gjc:F
9 4v8l:D 2822 40 0.1364 0.0043 0.3000 3.0 4ce4:o, 6hiv:US, 6hiv:UT, 6hiw:US, 6hiw:UT, 6hiy:US, 6hiy:UT, 4v8l:E, 4v8l:F, 4v8l:A, 4v8l:B, 4v8l:C, 4v8v:A, 4v8v:B, 4v8v:C, 4v8v:D, 4v8v:E, 4v8v:F, 4v8w:D, 4v8w:E, 4v8w:F, 4v8w:A, 4v8w:B, 4v8w:C
10 2nox:B 266 41 0.1364 0.0451 0.2927 3.6 2nox:A, 2nox:C, 2nox:D, 2nox:E, 2nox:F, 2nox:G, 2nox:H, 2nox:I, 2nox:J, 2nox:K, 2nox:L, 2nox:M, 2nox:N, 2nox:O, 2nox:P
11 3ax6:A 360 69 0.2045 0.0500 0.2609 4.7 3ax6:B, 3ax6:C, 3ax6:D
12 6djk:A 376 52 0.1818 0.0426 0.3077 5.2
13 7kha:I 385 42 0.1818 0.0416 0.3810 6.2
14 2hzs:B 235 33 0.1591 0.0596 0.4242 6.5 2hzs:F, 2hzs:D, 2hzs:H, 3rj1:E, 3rj1:L, 3rj1:S
15 8dfs:I 555 42 0.1818 0.0288 0.3810 7.4 8dej:J, 8dej:K, 8dex:I, 8dfa:I, 8dfa:J, 8dfo:I

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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