Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GDAATDTVQVGYRGTAMEQNYDHGDLKTKFAQVKLPQSPPPAGESPPGPLPWKNVQVLNDISIAEFNRTMIAMSTWVAGT
GNCAYCHNVAAFQDDTLPNGKPLYTKIVARRMLQMTRNINGNYSQHVKNTGVTCYTCHMGKPLPNGLWFYSSQTDYLRHY
LDRDGARVITQGVAPSNANRSSTKQAEWTYALMISQSRSLGVNCTYCHNTRQFASWREAPPARVTAYHGILMLRDVNQNY
LAPLQPVYPAVRLGAMGDAPKAQCVTCHNGAYKPLYGAQMAKDFPAMWGRADWNGVPFPGI

The query sequence (length=301) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7o0u:C 301 301 1.0000 1.0000 1.0000 0.0 7o0v:C, 7o0w:C, 7o0x:C
2 7c9r:C 311 312 0.4651 0.4502 0.4487 2.29e-87
3 7vrj:C 313 315 0.4817 0.4633 0.4603 3.10e-85 8wdu:C, 8wdv:C
4 5b5m:C 317 309 0.4352 0.4132 0.4239 4.43e-79 5b5m:o, 5b5n:C, 5b5n:o, 7c52:C, 1eys:C, 4v8k:AC, 4v8k:BC, 3wmm:C, 5y5s:C
5 7xxf:C 343 320 0.4419 0.3878 0.4156 1.49e-74
6 3t6d:C 334 328 0.4319 0.3892 0.3963 2.73e-66 4ac5:C, 4cas:A, 3d38:C, 1dxr:C, 6et5:C, 3g7f:C, 2i5n:C, 2jbl:C, 5m7j:A, 5m7k:A, 5m7l:A, 5nj4:C, 5o4c:C, 5o64:C, 1prc:C, 2prc:C, 3prc:C, 5prc:C, 6prc:C, 7prc:C, 7q7p:CCC, 7q7q:CCC, 1r2c:C, 3t6e:C, 1vrn:C, 2wjm:C, 2wjn:C, 2x5u:C, 2x5v:C, 6zhw:C, 6zi4:C, 6zi5:C, 6zi6:C, 6zi9:C, 6zia:C, 6zid:C
7 8k5o:C 346 326 0.3787 0.3295 0.3497 1.98e-48
8 8iug:C 316 235 0.2392 0.2278 0.3064 6.81e-19 8hju:C, 8hjv:C, 8iun:C, 8j5o:C, 8j5p:C, 5yq7:C
9 2g3f:A 414 40 0.0532 0.0386 0.4000 1.2 2bb0:A, 2bb0:B, 2g3f:B
10 4mo2:B 365 78 0.0631 0.0521 0.2436 5.0 4mo2:A
11 3guh:A 477 63 0.0598 0.0377 0.2857 7.6 3cop:A, 3cx4:A, 2qzs:A, 2r4t:A, 2r4u:A
12 6btm:A 221 17 0.0365 0.0498 0.6471 8.7
13 7mnr:B 40 31 0.0299 0.2250 0.2903 9.3

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218