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BioLiP
>protein
GDAAAGQAKAAVCAACHGADGNATIPGYPNLKGQNEQYIVSSIKAYKNKERSGGLAAVMQAQASLLSDDDIANLAAYYSS
L

The query sequence (length=81) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2zzs:A 81 81 1.0000 1.0000 1.0000 1.40e-53 2zzs:B, 2zzs:C, 2zzs:D, 2zzs:E, 2zzs:F, 2zzs:G, 2zzs:H, 2zzs:I, 2zzs:J, 2zzs:K, 2zzs:L, 2zzs:M, 2zzs:N, 2zzs:O, 2zzs:P, 2zzs:Q, 2zzs:R, 2zzs:S, 2zzs:T, 2zzs:U, 2zzs:V, 2zzs:W, 2zzs:X, 2zzs:Y, 2zzs:Z, 2zzs:1, 2zzs:2, 2zzs:3, 2zzs:4, 2zzs:5, 2zzs:6
2 1cno:G 87 80 0.6543 0.6092 0.6625 9.02e-23 1cno:A, 1cno:B, 1cno:C, 1cno:D, 1cno:E, 1cno:F, 1cno:H
3 4o1w:A 79 81 0.4568 0.4684 0.4568 8.58e-20 4o1w:D, 4o1w:B, 4o1w:C, 4o1w:E, 4o1w:F
4 1etp:A 190 86 0.4568 0.1947 0.4302 9.33e-18 1etp:B, 1m6z:A, 1m6z:B, 1m6z:C, 1m6z:D, 1m70:A, 1m70:B, 1m70:C, 1m70:D
5 1etp:A 190 71 0.2593 0.1105 0.2958 3.73e-05 1etp:B, 1m6z:A, 1m6z:B, 1m6z:C, 1m6z:D, 1m70:A, 1m70:B, 1m70:C, 1m70:D
6 8uf3:A 187 73 0.4074 0.1765 0.4521 1.75e-14 8uf3:B
7 8uf3:A 187 80 0.3333 0.1444 0.3375 3.65e-08 8uf3:B
8 8smr:K 181 69 0.3580 0.1602 0.4203 3.03e-14 6q2u:A, 8smr:N, 8snh:K, 8snh:N
9 8smr:K 181 71 0.2716 0.1215 0.3099 2.43e-06 6q2u:A, 8smr:N, 8snh:K, 8snh:N
10 8yts:A 83 77 0.3951 0.3855 0.4156 2.76e-13 8yts:B
11 5n1t:B 75 65 0.2840 0.3067 0.3538 1.10e-06
12 1c53:A 79 70 0.2840 0.2911 0.3286 7.42e-06
13 1h1o:A 172 70 0.2963 0.1395 0.3429 8.60e-06 1h1o:B
14 1h1o:A 172 69 0.2963 0.1395 0.3478 1.17e-05 1h1o:B
15 5lo9:A 471 89 0.3704 0.0637 0.3371 2.30e-05 5lo9:B
16 5lo9:A 471 82 0.3704 0.0637 0.3659 1.57e-04 5lo9:B
17 1dvh:A 79 70 0.2840 0.2911 0.3286 3.08e-05 2dvh:A, 1dwl:B, 1e08:E
18 3dmi:A 87 87 0.3827 0.3563 0.3563 4.68e-05
19 8snh:G 304 74 0.3086 0.0822 0.3378 7.21e-05
20 8snh:G 304 83 0.3457 0.0921 0.3373 0.006
21 1c6o:A 89 73 0.3086 0.2809 0.3425 1.30e-04 1c6o:B, 1c6r:A
22 8smr:G 312 79 0.3580 0.0929 0.3671 5.51e-04
23 8smr:G 312 79 0.2716 0.0705 0.2785 0.086
24 1a2s:A 89 67 0.2963 0.2697 0.3582 0.001 1ced:A, 1ctj:A
25 2c2c:A 112 111 0.4321 0.3125 0.3153 0.002 3c2c:A
26 1fcd:C 174 66 0.2222 0.1034 0.2727 0.002 1fcd:D
27 5djq:C 303 67 0.2469 0.0660 0.2985 0.016 5djq:M, 5djq:F, 5djq:I, 3mk7:C, 3mk7:M, 3mk7:F, 3mk7:I
28 5djq:C 303 82 0.3580 0.0957 0.3537 0.041 5djq:M, 5djq:F, 5djq:I, 3mk7:C, 3mk7:M, 3mk7:F, 3mk7:I
29 3vrd:A 174 66 0.2222 0.1034 0.2727 0.018
30 7y5e:GN 84 71 0.2840 0.2738 0.3239 0.033 7y5e:G2, 7y7a:G7, 7y7a:Go
31 3dr0:A 93 74 0.3086 0.2688 0.3378 0.041 3dr0:B, 3dr0:C, 4eic:A, 4eid:A
32 8gth:E 105 53 0.2222 0.1714 0.3396 0.061 8gth:A, 8gth:B, 8gth:C, 8gth:F, 8gth:D
33 1c6s:A 87 65 0.2840 0.2644 0.3538 0.13 6tr1:A, 6tr1:C, 6tr1:E, 6tsy:A, 6tsy:B, 6tsy:C, 6tsy:D, 6tsy:E, 6tsy:F
34 1cyj:A 90 65 0.2469 0.2222 0.3077 0.13 1cyi:A
35 7o38:A 81 81 0.3210 0.3210 0.3210 0.15
36 1gdv:A 85 71 0.2963 0.2824 0.3380 0.21
37 1qn2:A 99 33 0.1975 0.1616 0.4848 0.22 1qn2:B, 1qn2:C
38 7w2j:C 418 82 0.3210 0.0622 0.3171 0.28 8jej:C, 8jek:C, 8k6j:C, 8k6k:C, 7w2j:F, 7wsq:C, 7wsq:F, 8xcm:C, 8xcn:C
39 5ck3:D 230 45 0.1728 0.0609 0.3111 0.29
40 2zbo:A 86 71 0.2716 0.2558 0.3099 0.37 2zbo:C, 2zbo:E, 2zbo:G, 2zbo:I, 2zbo:K
41 4v2k:A 235 72 0.2469 0.0851 0.2778 0.39 4wq7:A, 4wq8:A, 4wq9:A, 4wqa:A, 4wqb:A, 4wqc:A, 4wqd:A, 4wqe:A
42 3ph2:B 85 66 0.3086 0.2941 0.3788 0.40 2v08:A, 2v08:B
43 1rzu:B 478 63 0.2222 0.0377 0.2857 0.63 1rzu:A
44 7b21:AAA 92 37 0.1852 0.1630 0.4054 0.96
45 5mxy:A 83 12 0.0988 0.0964 0.6667 1.1 5mxz:A
46 1fj0:A 114 33 0.1605 0.1140 0.3939 1.3 1fj0:B, 1fj0:C, 1fj0:D, 1hh7:A, 1i8o:A, 1i8p:A, 1i8p:B, 1i8p:C, 1i8p:D
47 7v6l:B 347 39 0.1975 0.0461 0.4103 1.3 7v6j:A, 7v6j:B, 7v6l:A
48 4rlr:A 126 27 0.1358 0.0873 0.4074 1.3
49 2d0s:A 79 77 0.2346 0.2405 0.2468 1.3
50 8gy3:A 440 70 0.2469 0.0455 0.2857 1.7
51 3m97:X 118 32 0.1728 0.1186 0.4375 2.1 1c7m:A, 1i6d:A, 1i6e:A, 1ql3:A, 1ql3:B, 1ql3:C, 1ql3:D, 1ql4:A, 1ql4:B, 1ql4:C, 1ql4:D
52 1ls9:A 91 65 0.2222 0.1978 0.2769 2.2
53 2bh4:X 121 53 0.2346 0.1570 0.3585 3.1 2bgv:X, 2bh5:X
54 4xxl:A 92 30 0.1358 0.1196 0.3667 4.2
55 1wve:C 75 72 0.2469 0.2667 0.2778 4.4 1dii:C, 1dii:D, 1diq:C, 1diq:D, 1wve:D
56 4iyb:A 140 48 0.1975 0.1143 0.3333 6.6 4izx:A, 4j2s:A
57 1c2n:A 116 39 0.1852 0.1293 0.3846 8.2 1c2r:A, 1c2r:B, 1vyd:A, 1vyd:B
58 4bed:A 1664 51 0.1852 0.0090 0.2941 9.7 4bed:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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