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BioLiP
>protein
GASIFRCRQCGQTISRRDWVWCFSLAQGLRLITIALCGQCGSHLGWHTFFGLIKDRLAEGP

The query sequence (length=61) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5amj:C 69 66 1.0000 0.8841 0.9242 2.49e-34 8bc6:C, 8c3h:C, 5oh3:C, 8rds:C
2 8ou6:C 57 59 0.9180 0.9825 0.9492 2.02e-32 7pjk:C
3 5oh7:C 82 81 1.0000 0.7439 0.7531 6.56e-32
4 6r1x:C 84 83 1.0000 0.7262 0.7349 8.84e-32 5ami:C, 6r13:C
5 7ps9:C 90 88 1.0000 0.6778 0.6932 6.27e-31 8ou3:C, 8ou4:C, 8ou5:C
6 6r1a:A 112 105 1.0000 0.5446 0.5810 2.04e-28 5amh:A, 5ami:A, 5ami:B, 5amj:A, 5amj:B, 5amk:A, 5amk:B, 5amk:C, 5amk:D, 8aop:A, 8aop:B, 8aoq:A, 8aoq:B, 8bc6:A, 8bc6:B, 8bc7:B, 8bc7:A, 8bc7:C, 8c3h:A, 8c3h:B, 5oh1:A, 5oh1:B, 5oh1:C, 5oh2:A, 5oh2:B, 5oh2:C, 5oh3:A, 5oh3:B, 5oh4:A, 5oh4:B, 5oh4:C, 5oh7:A, 5oh7:B, 5oh8:A, 5oh8:B, 5oh9:A, 5oh9:B, 5oh9:C, 5oha:A, 5oha:B, 5oha:C, 5ohb:A, 5ohb:B, 5ohb:C, 8ou3:A, 8ou3:B, 8ou4:A, 8ou4:B, 8ou5:A, 8ou5:B, 8ou6:A, 8ou6:B, 8ou7:A, 8ou7:B, 8ou7:C, 8ou9:A, 8ou9:B, 8ou9:C, 8oua:A, 8oua:B, 8oua:C, 7pjk:A, 7pjk:B, 7ps9:A, 7ps9:B, 7pso:A, 7pso:B, 7pso:C, 6r0q:A, 6r0q:C, 6r0q:B, 6r0q:D, 6r0s:A, 6r0s:B, 6r0s:C, 6r0u:A, 6r0u:B, 6r0u:C, 6r0v:A, 6r0v:B, 6r0v:C, 6r11:A, 6r11:B, 6r11:C, 6r12:A, 6r12:B, 6r12:C, 6r13:A, 6r13:B, 6r18:C, 6r18:A, 6r18:B, 6r19:B, 6r19:A, 6r19:C, 6r1a:B, 6r1a:C, 6r1c:A, 6r1c:B, 6r1c:C, 6r1d:A, 6r1d:B, 6r1k:A, 6r1k:B, 6r1k:C, 6r1w:A, 6r1w:B, 6r1w:C, 6r1x:A, 6r1x:B, 8rdp:A, 8rdp:B, 8rdp:C, 8rdq:A, 8rdq:B, 8rdq:C, 8rdr:A, 8rdr:B, 8rdr:C, 8rds:A, 8rds:B, 8rdt:A, 8rdt:B, 8rdt:C, 7shh:A, 7shh:B, 7shh:C, 4v2y:A, 4v2y:B, 4v2y:C, 4v2z:A, 4v2z:B, 4v2z:C, 4v30:A, 4v30:B, 4v30:C, 4v31:A, 4v31:B, 4v31:C, 4v32:A, 4v32:B, 4v32:C
7 8aop:C 53 61 0.8525 0.9811 0.8525 3.11e-26
8 5oh8:C 46 61 0.7377 0.9783 0.7377 5.32e-19 8aoq:C
9 6tr8:A 136 67 0.3443 0.1544 0.3134 0.83
10 4ci1:B 370 14 0.1475 0.0243 0.6429 0.90 4ci2:B, 4ci3:B
11 8rq9:A 316 14 0.1311 0.0253 0.5714 1.4 8rq1:A, 8rq8:A, 8rq9:C, 8rqa:A, 8rqc:A, 8rqc:D
12 2i13:A 151 20 0.1311 0.0530 0.4000 1.6
13 2i13:A 151 40 0.1639 0.0662 0.2500 2.7
14 6sym:A 135 38 0.2131 0.0963 0.3421 1.8 6sym:B
15 6h0g:B 401 14 0.1311 0.0200 0.5714 2.2 6bn7:B, 6bn8:B, 6bn9:B, 6bnb:B, 6boy:B, 7bqu:A, 7bqv:A, 8cvp:B, 8d7u:B, 8d7v:B, 8d7w:B, 8d7x:B, 8d7y:B, 8d7z:B, 8d80:B, 8d81:B, 8dey:A, 8dey:D, 5fqd:B, 8g66:B, 6h0f:B, 6h0f:E, 6h0f:H, 6h0f:K, 6h0g:E, 5hxb:Z, 5hxb:C, 7lps:B, 7lps:E, 7lps:H, 7lps:K, 8oiz:B, 8ojh:B, 8tnp:B, 8tnq:B, 8tnr:B, 4tzc:B, 4tzc:D, 8tzx:A, 8tzx:D, 8u15:A, 8u15:D, 8u16:A, 8u16:D, 8u17:D, 7u8f:A, 7u8f:D, 8uh6:B, 5v3o:C, 3wx1:A, 3wx1:B, 3wx2:A, 3wx2:B, 6xk9:Z, 6xk9:C, 5yiz:A, 5yiz:D, 5yiz:G, 5yiz:t, 5yj0:A, 5yj0:D, 5yj0:G, 5yj0:t, 5yj1:A, 5yj1:D, 5yj1:G, 5yj1:t
16 5fqd:E 367 14 0.1311 0.0218 0.5714 2.4 4tz4:C, 8u17:A, 6uml:C
17 9cuo:A 96 73 0.2951 0.1875 0.2466 3.7 9cuo:B, 9cuo:C, 9cuo:D, 9cuo:E, 9cuo:F, 4tzc:C, 4tzc:A, 4tzu:A, 4tzu:B, 4tzu:C, 4tzu:D, 5yiz:J, 5yiz:M, 5yiz:P, 5yiz:S, 5yiz:V, 5yiz:Y, 5yiz:b, 5yiz:e, 5yiz:h, 5yiz:k, 5yiz:n, 5yiz:q, 5yj0:J, 5yj0:M, 5yj0:P, 5yj0:S, 5yj0:V, 5yj0:Y, 5yj0:b, 5yj0:e, 5yj0:h, 5yj0:k, 5yj0:n, 5yj0:q, 5yj1:J, 5yj1:M, 5yj1:P, 5yj1:S, 5yj1:V, 5yj1:Y, 5yj1:b, 5yj1:e, 5yj1:h, 5yj1:k, 5yj1:n, 5yj1:q
18 8g66:E 303 14 0.1311 0.0264 0.5714 3.9
19 1mey:F 84 20 0.1148 0.0833 0.3500 7.6 1mey:C
20 2i13:B 144 30 0.1311 0.0556 0.2667 7.8
21 8j1j:B 387 11 0.1148 0.0181 0.6364 9.8 8j12:B, 8j3r:B
22 8j12:A 424 11 0.1148 0.0165 0.6364 9.8 8dzj:A, 8dzj:B, 8j1j:A, 8j3r:A, 7wju:A, 7wju:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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