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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GASIFRCRQCGQTISRRDWLLHVVFNPARVWCFSLAQGLRLIGAPSGEFSWFKGYDWTIALCGQCGSHLGWHYETFFGLI
KDRLAEGPAD

The query sequence (length=90) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7ps9:C 90 90 1.0000 1.0000 1.0000 7.95e-64 8ou3:C, 8ou4:C, 8ou5:C
2 6r1a:A 112 107 1.0000 0.8036 0.8411 2.91e-56 5amh:A, 5ami:A, 5ami:B, 5amj:A, 5amj:B, 5amk:A, 5amk:B, 5amk:C, 5amk:D, 8aop:A, 8aop:B, 8aoq:A, 8aoq:B, 8bc6:A, 8bc6:B, 8bc7:B, 8bc7:A, 8bc7:C, 8c3h:A, 8c3h:B, 5oh1:A, 5oh1:B, 5oh1:C, 5oh2:A, 5oh2:B, 5oh2:C, 5oh3:A, 5oh3:B, 5oh4:A, 5oh4:B, 5oh4:C, 5oh7:A, 5oh7:B, 5oh8:A, 5oh8:B, 5oh9:A, 5oh9:B, 5oh9:C, 5oha:A, 5oha:B, 5oha:C, 5ohb:A, 5ohb:B, 5ohb:C, 8ou3:A, 8ou3:B, 8ou4:A, 8ou4:B, 8ou5:A, 8ou5:B, 8ou6:A, 8ou6:B, 8ou7:A, 8ou7:B, 8ou7:C, 8ou9:A, 8ou9:B, 8ou9:C, 8oua:A, 8oua:B, 8oua:C, 7pjk:A, 7pjk:B, 7ps9:A, 7ps9:B, 7pso:A, 7pso:B, 7pso:C, 6r0q:A, 6r0q:C, 6r0q:B, 6r0q:D, 6r0s:A, 6r0s:B, 6r0s:C, 6r0u:A, 6r0u:B, 6r0u:C, 6r0v:A, 6r0v:B, 6r0v:C, 6r11:A, 6r11:B, 6r11:C, 6r12:A, 6r12:B, 6r12:C, 6r13:A, 6r13:B, 6r18:C, 6r18:A, 6r18:B, 6r19:B, 6r19:A, 6r19:C, 6r1a:B, 6r1a:C, 6r1c:A, 6r1c:B, 6r1c:C, 6r1d:A, 6r1d:B, 6r1k:A, 6r1k:B, 6r1k:C, 6r1w:A, 6r1w:B, 6r1w:C, 6r1x:A, 6r1x:B, 8rdp:A, 8rdp:B, 8rdp:C, 8rdq:A, 8rdq:B, 8rdq:C, 8rdr:A, 8rdr:B, 8rdr:C, 8rds:A, 8rds:B, 8rdt:A, 8rdt:B, 8rdt:C, 7shh:A, 7shh:B, 7shh:C, 4v2y:A, 4v2y:B, 4v2y:C, 4v2z:A, 4v2z:B, 4v2z:C, 4v30:A, 4v30:B, 4v30:C, 4v31:A, 4v31:B, 4v31:C, 4v32:A, 4v32:B, 4v32:C
3 6r1x:C 84 97 0.8444 0.9048 0.7835 4.74e-44 5ami:C, 6r13:C
4 5oh7:C 82 95 0.8333 0.9146 0.7895 8.02e-43
5 5amj:C 69 89 0.7444 0.9710 0.7528 5.42e-38 8bc6:C, 8c3h:C, 5oh3:C, 8rds:C
6 8ou6:C 57 87 0.6333 1.0000 0.6552 3.68e-27 7pjk:C
7 8aop:C 53 89 0.5889 1.0000 0.5955 1.13e-22
8 5oh8:C 46 89 0.5111 1.0000 0.5169 1.32e-15 8aoq:C
9 9cuo:A 96 88 0.3444 0.3229 0.3523 2.08e-11 9cuo:B, 9cuo:C, 9cuo:D, 9cuo:E, 9cuo:F, 4tzc:C, 4tzc:A, 4tzu:A, 4tzu:B, 4tzu:C, 4tzu:D, 5yiz:J, 5yiz:M, 5yiz:P, 5yiz:S, 5yiz:V, 5yiz:Y, 5yiz:b, 5yiz:e, 5yiz:h, 5yiz:k, 5yiz:n, 5yiz:q, 5yj0:J, 5yj0:M, 5yj0:P, 5yj0:S, 5yj0:V, 5yj0:Y, 5yj0:b, 5yj0:e, 5yj0:h, 5yj0:k, 5yj0:n, 5yj0:q, 5yj1:J, 5yj1:M, 5yj1:P, 5yj1:S, 5yj1:V, 5yj1:Y, 5yj1:b, 5yj1:e, 5yj1:h, 5yj1:k, 5yj1:n, 5yj1:q
10 8rq9:A 316 58 0.2889 0.0823 0.4483 2.88e-11 8rq1:A, 8rq8:A, 8rq9:C, 8rqa:A, 8rqc:A, 8rqc:D
11 6h0g:B 401 58 0.2889 0.0648 0.4483 7.00e-11 6bn7:B, 6bn8:B, 6bn9:B, 6bnb:B, 6boy:B, 7bqu:A, 7bqv:A, 8cvp:B, 8d7u:B, 8d7v:B, 8d7w:B, 8d7x:B, 8d7y:B, 8d7z:B, 8d80:B, 8d81:B, 8dey:A, 8dey:D, 5fqd:B, 8g66:B, 6h0f:B, 6h0f:E, 6h0f:H, 6h0f:K, 6h0g:E, 5hxb:Z, 5hxb:C, 7lps:B, 7lps:E, 7lps:H, 7lps:K, 8oiz:B, 8ojh:B, 8tnp:B, 8tnq:B, 8tnr:B, 4tzc:B, 4tzc:D, 8tzx:A, 8tzx:D, 8u15:A, 8u15:D, 8u16:A, 8u16:D, 8u17:D, 7u8f:A, 7u8f:D, 8uh6:B, 5v3o:C, 3wx1:A, 3wx1:B, 3wx2:A, 3wx2:B, 6xk9:Z, 6xk9:C, 5yiz:A, 5yiz:D, 5yiz:G, 5yiz:t, 5yj0:A, 5yj0:D, 5yj0:G, 5yj0:t, 5yj1:A, 5yj1:D, 5yj1:G, 5yj1:t
12 5fqd:E 367 58 0.2889 0.0708 0.4483 9.77e-11 4tz4:C, 8u17:A, 6uml:C
13 8g66:E 303 58 0.2889 0.0858 0.4483 2.39e-10
14 4ci1:B 370 58 0.2889 0.0703 0.4483 3.39e-10 4ci2:B, 4ci3:B
15 8qbn:Y 119 75 0.2111 0.1597 0.2533 0.057
16 4xt0:A 243 63 0.2000 0.0741 0.2857 0.68
17 2emc:A 46 29 0.1111 0.2174 0.3448 1.2
18 2i13:A 151 20 0.1000 0.0596 0.4500 2.1
19 5ugr:A 323 60 0.2222 0.0619 0.3333 2.7
20 4rul:A 823 23 0.1333 0.0146 0.5217 2.7 1cy1:A, 1cy2:A, 1cy4:A, 1cy6:A, 1cy7:A, 1cy8:A, 1mw8:X, 3px7:A
21 2yta:A 41 33 0.1111 0.2439 0.3030 5.9
22 2wbi:B 398 34 0.1222 0.0276 0.3235 6.7 2wbi:A
23 1mey:F 84 20 0.0889 0.0952 0.4000 9.5 1mey:C
24 7b0y:J 67 28 0.1111 0.1493 0.3571 9.9 8a3y:J, 7a6h:J, 7ae1:J, 7ae3:J, 7aea:J, 8b3d:J, 8b3f:J, 8bvw:J, 8byq:J, 8bz1:J, 7d58:J, 7d59:J, 7dn3:J, 6drd:J, 7du2:J, 7edx:x, 7eg7:x, 7eg8:x, 7eg9:x, 7ega:x, 7egb:x, 7egc:x, 7ena:PJ, 7enc:PJ, 6exv:J, 7f4g:J, 7fji:J, 7fjj:J, 5flm:J, 6gmh:J, 6gml:J, 8gxq:PJ, 8gxs:PJ, 8ity:J, 8iue:J, 8iuh:J, 5iy6:J, 5iy8:J, 5iy9:J, 5iya:J, 5iyb:J, 5iyc:J, 5iyd:J, 7lbm:J, 7nvr:J, 7nvs:J, 7nvt:J, 7nvu:J, 7nvy:J, 7nvz:J, 7nw0:J, 6o9l:J, 7ob9:J, 7oba:J, 7obb:J, 8oeu:J, 8oev:J, 8oew:J, 8of0:J, 5oik:J, 7okx:J, 7oky:J, 7ol0:J, 7oo3:J, 7oob:J, 7oop:J, 7opc:J, 7opd:J, 7ozn:J, 7ozn:V, 7ozo:J, 7ozo:V, 7ozp:J, 7ozp:V, 8p4a:J, 8p4b:J, 8p4e:J, 8p4f:J, 7pks:J, 8rbx:J, 8s51:J, 8s52:J, 8s54:J, 8s55:J, 8s5n:J, 6ted:J, 8uha:J, 8uhd:J, 8uhg:J, 8ui0:J, 8uis:J, 7unc:J, 7und:J, 7vba:J, 7vbb:J, 7vbc:J, 8wak:x, 8wal:x, 8wan:x, 8wao:x, 8wap:x, 8waq:x, 8war:x, 8was:x, 8wat:x, 8wau:x, 8wav:x, 8waw:x, 8wax:x, 8way:x, 8waz:x, 8wb0:x, 7ycx:8, 7zwd:J, 7zx7:J, 7zx8:J

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417