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BioLiP
>protein
GASIFRCRQCGQTISRRDWLLFRVWCFSLAQGLRLIGAPSGEDWTIALCGQCGSHLGWHYEGGSQPQTFFGLIKDRLAEG
PA

The query sequence (length=82) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5oh7:C 82 82 1.0000 1.0000 1.0000 2.30e-56
2 6r1a:A 112 106 1.0000 0.7321 0.7736 2.36e-49 5amh:A, 5ami:A, 5ami:B, 5amj:A, 5amj:B, 5amk:A, 5amk:B, 5amk:C, 5amk:D, 8aop:A, 8aop:B, 8aoq:A, 8aoq:B, 8bc6:A, 8bc6:B, 8bc7:B, 8bc7:A, 8bc7:C, 8c3h:A, 8c3h:B, 5oh1:A, 5oh1:B, 5oh1:C, 5oh2:A, 5oh2:B, 5oh2:C, 5oh3:A, 5oh3:B, 5oh4:A, 5oh4:B, 5oh4:C, 5oh7:A, 5oh7:B, 5oh8:A, 5oh8:B, 5oh9:A, 5oh9:B, 5oh9:C, 5oha:A, 5oha:B, 5oha:C, 5ohb:A, 5ohb:B, 5ohb:C, 8ou3:A, 8ou3:B, 8ou4:A, 8ou4:B, 8ou5:A, 8ou5:B, 8ou6:A, 8ou6:B, 8ou7:A, 8ou7:B, 8ou7:C, 8ou9:A, 8ou9:B, 8ou9:C, 8oua:A, 8oua:B, 8oua:C, 7pjk:A, 7pjk:B, 7ps9:A, 7ps9:B, 7pso:A, 7pso:B, 7pso:C, 6r0q:A, 6r0q:C, 6r0q:B, 6r0q:D, 6r0s:A, 6r0s:B, 6r0s:C, 6r0u:A, 6r0u:B, 6r0u:C, 6r0v:A, 6r0v:B, 6r0v:C, 6r11:A, 6r11:B, 6r11:C, 6r12:A, 6r12:B, 6r12:C, 6r13:A, 6r13:B, 6r18:C, 6r18:A, 6r18:B, 6r19:B, 6r19:A, 6r19:C, 6r1a:B, 6r1a:C, 6r1c:A, 6r1c:B, 6r1c:C, 6r1d:A, 6r1d:B, 6r1k:A, 6r1k:B, 6r1k:C, 6r1w:A, 6r1w:B, 6r1w:C, 6r1x:A, 6r1x:B, 8rdp:A, 8rdp:B, 8rdp:C, 8rdq:A, 8rdq:B, 8rdq:C, 8rdr:A, 8rdr:B, 8rdr:C, 8rds:A, 8rds:B, 8rdt:A, 8rdt:B, 8rdt:C, 7shh:A, 7shh:B, 7shh:C, 4v2y:A, 4v2y:B, 4v2y:C, 4v2z:A, 4v2z:B, 4v2z:C, 4v30:A, 4v30:B, 4v30:C, 4v31:A, 4v31:B, 4v31:C, 4v32:A, 4v32:B, 4v32:C
3 7ps9:C 90 95 0.9146 0.8333 0.7895 7.31e-43 8ou3:C, 8ou4:C, 8ou5:C
4 6r1x:C 84 96 0.8537 0.8333 0.7292 3.61e-38 5ami:C, 6r13:C
5 5amj:C 69 82 0.8171 0.9710 0.8171 2.01e-37 8bc6:C, 8c3h:C, 5oh3:C, 8rds:C
6 8ou6:C 57 80 0.6951 1.0000 0.7125 3.85e-28 7pjk:C
7 8aop:C 53 82 0.6463 1.0000 0.6463 1.46e-23
8 5oh8:C 46 82 0.5610 1.0000 0.5610 2.59e-16 8aoq:C
9 9cuo:A 96 86 0.3415 0.2917 0.3256 3.65e-07 9cuo:B, 9cuo:C, 9cuo:D, 9cuo:E, 9cuo:F, 4tzc:C, 4tzc:A, 4tzu:A, 4tzu:B, 4tzu:C, 4tzu:D, 5yiz:J, 5yiz:M, 5yiz:P, 5yiz:S, 5yiz:V, 5yiz:Y, 5yiz:b, 5yiz:e, 5yiz:h, 5yiz:k, 5yiz:n, 5yiz:q, 5yj0:J, 5yj0:M, 5yj0:P, 5yj0:S, 5yj0:V, 5yj0:Y, 5yj0:b, 5yj0:e, 5yj0:h, 5yj0:k, 5yj0:n, 5yj0:q, 5yj1:J, 5yj1:M, 5yj1:P, 5yj1:S, 5yj1:V, 5yj1:Y, 5yj1:b, 5yj1:e, 5yj1:h, 5yj1:k, 5yj1:n, 5yj1:q
10 8rq9:A 316 58 0.2805 0.0728 0.3966 9.49e-07 8rq1:A, 8rq8:A, 8rq9:C, 8rqa:A, 8rqc:A, 8rqc:D
11 6h0g:B 401 58 0.2805 0.0574 0.3966 2.33e-06 6bn7:B, 6bn8:B, 6bn9:B, 6bnb:B, 6boy:B, 7bqu:A, 7bqv:A, 8cvp:B, 8d7u:B, 8d7v:B, 8d7w:B, 8d7x:B, 8d7y:B, 8d7z:B, 8d80:B, 8d81:B, 8dey:A, 8dey:D, 5fqd:B, 8g66:B, 6h0f:B, 6h0f:E, 6h0f:H, 6h0f:K, 6h0g:E, 5hxb:Z, 5hxb:C, 7lps:B, 7lps:E, 7lps:H, 7lps:K, 8oiz:B, 8ojh:B, 8tnp:B, 8tnq:B, 8tnr:B, 4tzc:B, 4tzc:D, 8tzx:A, 8tzx:D, 8u15:A, 8u15:D, 8u16:A, 8u16:D, 8u17:D, 7u8f:A, 7u8f:D, 8uh6:B, 5v3o:C, 3wx1:A, 3wx1:B, 3wx2:A, 3wx2:B, 6xk9:Z, 6xk9:C, 5yiz:A, 5yiz:D, 5yiz:G, 5yiz:t, 5yj0:A, 5yj0:D, 5yj0:G, 5yj0:t, 5yj1:A, 5yj1:D, 5yj1:G, 5yj1:t
12 5fqd:E 367 58 0.2805 0.0627 0.3966 2.78e-06 4tz4:C, 8u17:A, 6uml:C
13 8g66:E 303 58 0.2805 0.0759 0.3966 6.56e-06
14 4ci1:B 370 58 0.2805 0.0622 0.3966 1.08e-05 4ci2:B, 4ci3:B
15 7l4l:A 412 43 0.1707 0.0340 0.3256 1.5 1b3n:A, 3g0y:A, 3g11:A, 2gfx:A, 3hnz:A, 3ho2:A, 3ho9:A, 3i8p:A, 7l4e:A, 7l4l:B, 6okg:A, 6olt:A
16 2i13:A 151 20 0.1098 0.0596 0.4500 1.9
17 3cxk:A 131 20 0.1220 0.0763 0.5000 2.0 3cez:A, 3cez:B, 3cxk:B
18 6hqv:A 1555 38 0.1585 0.0084 0.3421 2.3 6hqv:B
19 6tr8:A 136 67 0.2561 0.1544 0.3134 2.8
20 8qbn:Y 119 83 0.2439 0.1681 0.2410 2.9
21 6q9v:B 145 18 0.1098 0.0621 0.5000 3.2 6q9v:A, 6qa0:A, 6qa0:B
22 2qzx:A 342 29 0.1585 0.0380 0.4483 3.8 2qzx:B
23 2k8d:A 151 20 0.0976 0.0530 0.4000 4.0
24 8pv1:LB 389 30 0.1829 0.0386 0.5000 4.3 7olc:LB, 7old:LB, 8oo0:LB, 8pv2:LB, 8pv3:LB, 8pv4:LB, 8pv5:LB, 8pv6:LB, 8pv7:LB, 8pv8:LB, 8pvk:LB, 8pvl:LB, 7r81:E1, 7z3n:LB, 7z3o:LB
25 5v1d:A 193 54 0.2317 0.0984 0.3519 4.4
26 3hci:A 153 71 0.2195 0.1176 0.2535 5.0 3hci:B, 3hcj:A, 3hcj:B
27 8bd3:3 221 61 0.2195 0.0814 0.2951 5.4 8bd3:5, 8bd3:N, 8bd3:p, 8bd3:8, 8bd3:n
28 8r3r:A 658 43 0.1707 0.0213 0.3256 5.7 8r3r:B, 8r3r:C, 8r3r:D
29 8c3a:k 386 30 0.1707 0.0363 0.4667 6.3 8c3a:AX, 8cq7:k, 8cq7:AX, 8cqw:k, 8cqw:AX, 8cre:k, 8cre:AX, 8oeq:k, 8oeq:AX, 7pzy:k, 7q08:k, 7q0f:k, 7q0p:k, 7q0r:k, 8q5i:k
30 1mey:F 84 20 0.0976 0.0952 0.4000 7.3 1mey:C
31 1dmr:A 779 50 0.2073 0.0218 0.3400 9.0 1dms:A, 2dmr:A, 3dmr:A, 4dmr:A, 1e18:A, 1e5v:A, 1e5v:C, 1e60:A, 1e60:C, 1e61:A, 1e61:C, 1h5n:A, 1h5n:C
32 7ktr:A 3042 23 0.1341 0.0036 0.4783 9.0
33 8xvg:L 3485 23 0.1341 0.0032 0.4783 9.0 8xvv:L

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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