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BioLiP
>protein
GASGDVCQDCIQMVTDIQTAVRTNSTFVQALVEHVKEECDRLGPGMADICKNYISQYSEIAIQMMMHMQPKEICALVGFC
D

The query sequence (length=81) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6slr:B 81 81 1.0000 1.0000 1.0000 5.08e-57 6slr:C, 4v2o:B, 4v2o:C
2 5yvg:A 830 29 0.1481 0.0145 0.4138 0.60 2h4m:B, 2ot8:B, 5yvh:A
3 8sgh:A 844 29 0.1481 0.0142 0.4138 0.60 7cyl:A, 4fdd:A, 4fq3:A, 2h4m:A, 5j3v:A, 5j3v:B, 4jlq:A, 4oo6:A, 2ot8:A, 5tqc:A, 7vpw:A, 5yvi:A, 2z5k:A, 2z5m:A, 2z5n:A, 2z5o:A
4 5yvg:B 764 29 0.1481 0.0157 0.4138 0.66
5 4fb3:A 115 67 0.1852 0.1304 0.2239 0.84 4fb3:B, 4fb3:E
6 5hdt:A 1085 61 0.1852 0.0138 0.2459 1.9 5hdt:B
7 1x8d:A 104 32 0.1605 0.1250 0.4062 2.6 1x8d:B, 1x8d:C, 1x8d:D
8 3mx6:B 260 77 0.2099 0.0654 0.2208 2.7 3mr1:A, 3mr1:B, 3mr1:C, 3mr1:D, 3mx6:A
9 7wgh:A 350 22 0.1358 0.0314 0.5000 3.1 7wgi:A
10 3e5p:B 371 19 0.1235 0.0270 0.5263 3.9 3e5p:A, 3e5p:C, 3e6e:A, 3e6e:C, 3e6e:B
11 1zjc:A 413 22 0.0988 0.0194 0.3636 5.1
12 8dga:A 1629 42 0.1481 0.0074 0.2857 7.0
13 8dg5:A 1635 42 0.1481 0.0073 0.2857 7.5 8dg7:A
14 8dfv:A 1664 42 0.1481 0.0072 0.2857 7.5
15 5dqr:C 421 18 0.1235 0.0238 0.5556 8.4 5dqr:A, 5dqr:B, 5dqr:D, 5dqr:E, 5dqr:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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