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BioLiP
>protein
GAMGPGVDTQIFEDPREFLSHLEEYLRQVGGSEEYWLSQIQNHMNGPAKKWWEFKQGSVKNWVEFKKEFLQYSEG

The query sequence (length=75) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4x3h:A 79 71 0.9333 0.8861 0.9859 8.30e-48 8qf5:H, 6tno:A, 6tno:C, 6tno:E, 6tnq:A, 6tnq:C, 6tnq:E, 6tq0:A, 6tq0:C, 6tq0:E, 6tq0:G, 6tq0:I, 6tq0:K, 6tq0:M, 6tq0:O, 4x3i:A
2 8hj4:C 130 39 0.2133 0.1231 0.4103 1.6
3 6sl1:A 2652 58 0.2267 0.0064 0.2931 2.0 6sky:A, 6sky:B
4 6iq5:A 459 66 0.3200 0.0523 0.3636 3.1 3pm0:A
5 6et5:3 58 47 0.1867 0.2414 0.2979 3.5 6et5:P, 6et5:S, 6et5:V, 6et5:Y, 6et5:b, 6et5:e, 6et5:h, 6et5:k, 6et5:n, 6et5:q, 6et5:t, 6et5:w, 6et5:z, 6et5:6, 6et5:F, 6et5:K
6 7oik:A 4426 21 0.1200 0.0020 0.4286 3.8 7oim:A, 6tax:A, 6tay:A
7 7vjv:A 221 30 0.1467 0.0498 0.3667 4.6
8 1y9d:D 560 39 0.1467 0.0196 0.2821 5.2 1y9d:A, 1y9d:C
9 4fee:A 586 39 0.1467 0.0188 0.2821 5.5 2ez4:A, 2ez4:B, 2ez8:A, 2ez8:B, 2ez9:A, 2ez9:B, 2ezt:A, 2ezt:B, 2ezu:A, 2ezu:B, 4fee:B, 4feg:A, 4feg:B, 6haf:A, 6haf:B, 4kgd:A, 4kgd:B, 1pow:A, 1pow:B, 1pox:A, 1pox:B, 1y9d:B
10 6due:A 737 47 0.2133 0.0217 0.3404 5.9
11 3s6j:E 220 16 0.0933 0.0318 0.4375 7.7 3s6j:A, 3s6j:B, 3s6j:C, 3s6j:D, 3s6j:F
12 2zja:A 700 43 0.1733 0.0186 0.3023 9.9 2zj5:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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