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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GAINLYSSRHYDTDQALYDSFTKKTGLKVNLIEGKGDKLIERIKSEGANSPADVFMTVDAGRLWRAQEAGILQPISSSTL
NNKIPANLRSPEKLWFGFSKRARVIMYNKNKVQPSELSTYEDLAQNKWKGKIVIRSSSNIYNQSLIASLIEIHGMSDAEG
WAKGFVRNFARPPEGNDTAQIKAVAAGIGDIGLANSYYLARLKRSSKPEDQAVADKVGMFFPNQNGRGTHVNISGGGVVK
NAPNKEGAIKFLEYLVSPEAQKIFSEGNNEYPVVAGVPIASVLKPFGSFKNDSTNVSVYGKLNADAIKLMDRVGWKLE

The query sequence (length=318) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6g7n:A 318 318 1.0000 1.0000 1.0000 0.0 6g7n:B, 6g7p:B, 6g7p:A
2 3f11:A 316 314 0.6132 0.6171 0.6210 6.29e-148 2pt2:A
3 2vp1:A 313 316 0.5849 0.5942 0.5886 7.05e-140 2vp1:B
4 7li0:A 312 314 0.4780 0.4872 0.4841 2.04e-101 7li0:B, 7li1:A, 7li1:B, 7li1:C, 7li1:D
5 3e13:X 317 315 0.4277 0.4290 0.4317 1.28e-95 1y4t:A, 1y4t:D
6 8c4y:AAA 312 314 0.3868 0.3942 0.3917 1.31e-76 8oei:A, 8oem:A, 8oen:A, 8ogg:A, 8rk1:A
7 2owt:A 315 314 0.4182 0.4222 0.4236 2.08e-76 2ows:A
8 1si0:A 316 316 0.3899 0.3924 0.3924 1.26e-68 1si1:A
9 1d9y:A 309 319 0.2925 0.3010 0.2915 3.32e-36 1o7t:A, 1o7t:B, 1o7t:C, 1o7t:D, 1o7t:E, 1o7t:F, 1o7t:G, 1o7t:H, 1o7t:I, 1r1n:A, 1r1n:B, 1r1n:C, 1r1n:D, 1r1n:E, 1r1n:F, 1r1n:G, 1r1n:H, 1r1n:I, 1xc1:A, 1xc1:B, 1xc1:C, 1xc1:D, 1xc1:E, 1xc1:F, 1xc1:G, 1xc1:H, 1xc1:I
10 1d9v:A 309 319 0.2987 0.3074 0.2978 3.69e-36 3kn7:A, 3kn8:A, 1mrp:A, 1nnf:A, 2o68:A, 3od7:A, 3odb:A
11 6ivy:B 307 293 0.2862 0.2964 0.3106 2.79e-34 6ivy:A, 6j2s:A, 6j2s:B
12 8j4h:A 309 278 0.2673 0.2751 0.3058 2.36e-32 8j4j:A
13 8k7n:A 307 280 0.2704 0.2801 0.3071 6.74e-32
14 4elq:A 310 320 0.2767 0.2839 0.2750 2.43e-31 4elp:A, 4elp:B, 4elp:C, 4elp:D, 4elq:B, 4elr:A, 4elr:B, 3wae:A, 3wae:B
15 1xvx:A 311 280 0.2642 0.2701 0.3000 9.95e-29
16 6wce:A 314 277 0.2013 0.2038 0.2310 3.60e-08
17 3cg3:A 315 47 0.0660 0.0667 0.4468 4.72e-04
18 2qry:C 318 247 0.1792 0.1792 0.2308 7.44e-04 2qry:A, 2qry:B, 2qry:D
19 3cg1:A 293 39 0.0503 0.0546 0.4103 0.002 3cg1:B
20 6lkg:A 294 266 0.1855 0.2007 0.2218 0.002 6lkg:C, 6lkh:A, 6lkh:B, 6lkj:A, 6lkk:A
21 8x1a:B 319 286 0.1855 0.1850 0.2063 0.008
22 1poy:1 323 277 0.1824 0.1796 0.2094 0.25 1pot:A, 1poy:2, 1poy:3, 1poy:4
23 5f7v:A 388 61 0.0629 0.0515 0.3279 0.40
24 7c0k:B 397 151 0.1195 0.0957 0.2517 0.77 7c0f:A, 7c0f:B, 7c0k:A, 7c0l:A, 7c0l:B, 7c0o:A, 7c0o:B, 7c0r:A, 7c0r:B, 7c0s:A, 7c0s:B, 7c0t:A, 7c0t:B, 7c0u:A, 7c0u:B, 7c0v:A, 7c0v:B, 7c0w:A, 7c0w:B, 7c0x:A, 7c0x:B, 7c0y:A, 7c0y:B, 7c0z:A, 7c0z:B, 7c14:A, 7c14:B, 7c15:A, 7c15:B, 7c16:A, 7c16:B, 7c19:A, 7c19:B
25 2onr:A 314 69 0.0660 0.0669 0.3043 0.80 3cij:A, 3cij:B, 2onk:E, 2onk:J, 2ons:A
26 1ak0:A 264 32 0.0535 0.0644 0.5312 0.90
27 2zyo:A 385 57 0.0597 0.0494 0.3333 0.94 2zyk:A, 2zyk:B, 2zyk:C, 2zyk:D, 2zym:A, 2zyn:A
28 6hly:A 320 108 0.0849 0.0844 0.2500 1.1 6hlz:A, 6hlz:B, 6hm2:A, 6hm2:B, 6hm2:C, 6hm2:D, 6hm2:E
29 2xd3:A 375 55 0.0503 0.0427 0.2909 1.2
30 4uob:A 242 71 0.0755 0.0992 0.3380 1.6 8a5g:A
31 4kd5:C 229 30 0.0440 0.0611 0.4667 1.7
32 5mk9:A 378 101 0.0912 0.0767 0.2871 2.0 5m28:A, 5mka:A, 5mtt:A, 5mtu:A
33 7x0l:A 409 62 0.0566 0.0440 0.2903 2.4 7x0j:A, 7x0j:B, 7x0k:A, 7x0k:B, 7x0l:B, 7x0m:A, 7x0m:B, 7x0n:A, 7x0n:B
34 8bfy:A 393 117 0.1069 0.0865 0.2906 3.3
35 6eon:A 754 104 0.0943 0.0398 0.2885 6.1
36 7f6e:B 341 140 0.1101 0.1026 0.2500 7.1 7f6e:A, 7f6e:C, 7f6f:A, 7f6f:B, 7f6n:A, 7f6n:B, 7f6n:C, 7f6o:A, 7f6o:B, 7f6q:A, 7f6r:A, 7f6s:A, 7f6u:A
37 6tg3:D 327 33 0.0346 0.0336 0.3333 8.4 5l9g:A, 5l9g:B, 5l9i:A, 5l9i:B, 5l9l:A, 5l9l:B, 6tg2:A, 6tg2:B, 6tg2:C, 6tg2:D, 6tg3:A, 6tg3:B, 6tg3:C
38 2w7y:A 389 43 0.0440 0.0360 0.3256 8.7 2w7y:B
39 8k22:A 929 114 0.0912 0.0312 0.2544 9.3 8k21:a, 8k22:a, 8k23:A, 8k23:a, 8k24:a, 8k24:A, 8k25:A, 8k25:a
40 8di0:B 426 28 0.0377 0.0282 0.4286 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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