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BioLiP
>protein
GADDDKPIQVTQMPQLAQQFIKQHFSDSKVALAKMESDFLYKSYEVIFTNGNKVEFDKKGNWEEVDCKHTSVPVAIIPAA
IQKYVTTNYPDAKVLKIERDKKDYEVKLSNRTELKFDLKFNLIDIDN

The query sequence (length=127) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3db7:A 127 127 1.0000 1.0000 1.0000 6.97e-92
2 6ai9:B 311 92 0.1654 0.0675 0.2283 0.22 6ai9:A, 6aik:A, 6aik:B, 6aim:A, 6aim:B, 6aip:A, 6aip:B
3 1kqq:A 131 54 0.1260 0.1221 0.2963 1.6
4 6ywe:B 326 46 0.1102 0.0429 0.3043 3.2 6yws:B, 6ywv:B, 6ywx:B, 6ywy:B
5 3jcs:Z 79 72 0.1260 0.2025 0.2222 4.0
6 2gpy:B 192 35 0.1024 0.0677 0.3714 4.7 2gpy:A
7 6b51:A 246 30 0.1024 0.0528 0.4333 7.5 6b52:A, 6b53:A, 6b53:B, 6b54:A, 5tiv:A, 5tiw:A, 5tiw:B, 5tix:A, 5tix:B, 5tiy:A, 6uuy:A, 6uuy:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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