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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
FYTAPSTESKFTEVLSKAKLQYPTSTTVAFADDLLDGYAASYFYLTSDLYMQFQVAGSSQRSELREMETSGDEAAWDCTG
STAHVASAQIAIPVQEDGIEEVTILQVHDSDVTPVLRISWVSSITIDGVTSEDVVLATIRNGIDDSTATKTVLQAHTTSR
TEFNINVQNSKLSITVDGTTELDEADISQFDGSTCYFKAGAFNNNPTDTSANARIKMYELEWVDHHH

The query sequence (length=227) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7ncz:A 227 227 1.0000 1.0000 1.0000 1.86e-170 7nm6:A, 7npp:A, 7ny3:A, 7o6h:A, 7oof:A, 7ory:A, 7p25:A, 7p90:A, 7pbf:A
2 8pcx:A 232 231 0.5066 0.4957 0.4978 2.33e-73 8bjo:A, 8bxz:A, 8p6o:A, 8pc3:A, 8pc8:A, 8pdt:A, 8ped:A, 8qli:A, 8r43:A, 8rbn:A
3 7w18:A 212 201 0.2643 0.2830 0.2985 6.41e-15 7w13:A
4 2zaa:A 232 243 0.2775 0.2716 0.2593 9.14e-05 2cws:A, 2zab:A, 2zac:A
5 7c8f:A 266 241 0.2467 0.2105 0.2324 0.089 7c8f:B
6 7w16:A 264 42 0.0661 0.0568 0.3571 5.6
7 8uza:A 910 55 0.0925 0.0231 0.3818 6.4 8uzb:A
8 6sg9:Fe 122 25 0.0485 0.0902 0.4400 6.7 6sgb:Fe
9 8jtr:A 1056 55 0.0925 0.0199 0.3818 6.9
10 4efp:A 235 103 0.1013 0.0979 0.2233 7.0 4efp:B, 4efq:A, 4efq:B
11 8jtj:A 1042 55 0.0925 0.0202 0.3818 7.1
12 4lcv:C 129 30 0.0485 0.0853 0.3667 8.6
13 8k7n:A 307 67 0.0925 0.0684 0.3134 9.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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