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BioLiP
>protein
FVIRPATAADCSDILRLIKELARYEYMEEQVILTEKDLLEDGFGEHPFYHCLVAEVPKEHWTPEGHSIVGFAMYYFTYDP
WIGKLLYLEDFFVMSDYRGFGIGSEILKNLSQVAMRCRCSSMHFLVAEWNEPSINFYKRRGASDLSSEEGWRLFKIDKEY
LLKMATEE

The query sequence (length=168) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2b4b:B 170 168 1.0000 0.9882 1.0000 4.97e-126 2b3v:A, 2b4b:A, 2b4d:A, 2b4d:B, 2b58:A, 3bj7:A, 3bj7:B, 3bj7:C, 3bj7:D, 3bj8:A, 3bj8:B, 3bj8:C, 3bj8:D, 2fxf:A, 2fxf:B, 2jev:A, 2jev:B
2 2bei:A 156 163 0.4405 0.4744 0.4540 1.47e-47 2q4v:A
3 7zkt:B 202 192 0.3214 0.2673 0.2812 4.33e-18 7zhc:A, 7zhc:B, 7zkt:A, 7zkt:C, 7zkt:D, 7zkt:E, 7zkt:F, 7zkt:G, 7zkt:H
4 7ovv:B 196 193 0.2798 0.2398 0.2435 1.50e-11 7ovv:A
5 6z00:A 156 56 0.1071 0.1154 0.3214 8.77e-04 6yzz:A, 6z00:B
6 5hgz:A 211 60 0.1012 0.0806 0.2833 0.028 5hh0:A, 5hh1:A, 5icv:A, 5icv:B, 5icw:A, 5icw:B, 5icw:C, 5icw:D
7 1i1d:D 161 67 0.1012 0.1056 0.2537 0.10 1i12:A, 1i12:B, 1i12:C, 1i12:D, 1i1d:A, 1i1d:B, 1i1d:C
8 3f8k:A 131 49 0.0893 0.1145 0.3061 0.10
9 3pp9:A 176 128 0.1845 0.1761 0.2422 0.12 3pp9:B, 3pp9:C
10 1tiq:A 173 56 0.0893 0.0867 0.2679 0.18 1tiq:B
11 3zj0:A 202 57 0.0893 0.0743 0.2632 0.21
12 6th0:A 176 61 0.1131 0.1080 0.3115 0.31 6tgx:A, 6tgx:B, 6th0:B
13 2ob0:C 166 69 0.0952 0.0964 0.2319 0.41 2ob0:A, 2ob0:B, 6ppl:A, 2psw:A, 2psw:B, 2psw:C, 3tfy:A, 3tfy:B, 3tfy:C, 6wf3:A, 6wf3:B, 6wf3:C, 6wf3:D, 6wf3:E, 6wf3:F, 6wf5:A, 6wf5:B, 6wfg:A, 6wfg:C, 6wfg:E, 6wfk:A, 6wfk:B, 6wfk:C, 6wfn:A, 6wfo:A, 6wfo:B, 6wfo:C, 4x5k:A
14 6wqc:A 293 87 0.1250 0.0717 0.2414 0.65 6wqb:A
15 4ua3:B 193 71 0.1190 0.1036 0.2817 3.0 4ua3:A
16 2jlm:F 180 50 0.0714 0.0667 0.2400 3.4
17 7cs1:A 191 27 0.0714 0.0628 0.4444 3.7 7cs0:A, 7cs0:B, 7cs1:B, 7csi:A, 7csi:B, 7csj:A, 7csj:B
18 3klo:D 173 77 0.1250 0.1214 0.2727 5.9
19 1ghe:B 171 37 0.0536 0.0526 0.2432 8.2 1ghe:A, 1j4j:A, 1j4j:B
20 4g7f:A 419 39 0.0833 0.0334 0.3590 8.6
21 3klo:A 217 77 0.1250 0.0968 0.2727 8.9 3klo:B, 3klo:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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