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BioLiP
>protein
FTFASPTQVFFNSANVRQVDVPTQTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSVTVNADSSVQLLAEEA
VTL

The query sequence (length=83) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4asu:H 83 83 1.0000 1.0000 1.0000 4.49e-55
2 5fl7:H 113 74 0.4096 0.3009 0.4595 4.61e-17
3 2jdi:H 88 83 0.5060 0.4773 0.5060 2.96e-11 2ck3:H, 2w6j:H
4 8ap6:H1 161 75 0.2771 0.1429 0.3067 3.68e-06 8ap6:H2, 8ap9:H, 8apa:H1, 8apb:H1, 8apc:H1, 8apd:H1, 8ape:H1, 8aph:H1, 8apj:H1, 8apk:H1
5 2e5y:A 133 67 0.2530 0.1579 0.3134 0.42 2e5y:B, 7xkq:H
6 8a5q:U 606 22 0.1205 0.0165 0.4545 5.2 8a5d:U, 8a5p:U
7 5hkk:H 132 55 0.2169 0.1364 0.3273 5.3 5hkk:P
8 3dcm:X 188 36 0.1446 0.0638 0.3333 6.0
9 3gs2:A 109 43 0.1687 0.1284 0.3256 6.5 3gs2:C
10 9awk:A 402 25 0.1084 0.0224 0.3600 7.1 9avu:A, 9avu:C, 9avv:C, 9awj:A, 9awj:C, 9awk:C
11 3ele:A 398 23 0.1325 0.0276 0.4783 7.4 3ele:B, 3ele:C, 3ele:D
12 4yn3:A 596 65 0.2651 0.0369 0.3385 7.7 3vta:A, 3vta:B
13 7mhs:E 489 24 0.1084 0.0184 0.3750 8.2
14 3l31:A 234 30 0.1325 0.0470 0.3667 9.4 3l2b:A, 3l2b:B, 3l31:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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